PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G02570.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 530aa    MW: 55780.9 Da    PI: 6.9854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G02570.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.5e-16359405455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  OMERI05G02570.4 359 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 405
                      5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.11E-18351409No hitNo description
Gene3DG3DSA:4.10.280.106.6E-21352413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-21352416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-14359405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MLRGNDTGND LAELLWDNGA PAPLRPRPPP PFQPFTCSAA ATSSPAHDYL FIKNLMRGGG  60
AANHHHHHHH HDDVPWLHYH PVVDDDDDAD ADTAPLPPDY CAALLSGLSD HLPPPAAAAS  120
REDPDPCSSS HGAVVPSTSA VAKQARTSAA GDGGVMNFTF FSRPLQQRPS GGETASASAS  180
AAGTSSVPVE STVVQAATNR LRSTPLFSDQ RMAWLHPPKP SPRAAAPPPP PPLAPTTRHR  240
LDTAAATATV AQRLPPSEAR APDAPPPAAT ATATTSSVCS GNGDRSQLKR RDSHNNQSAE  300
WSASQDEVSK PPPPPPLLLA IAHAYVTSPP LQLDLDDELA GAHRRSAARS SKRSRTAEVH  360
NLSERRRRDR INEKMRALQE LIPNCNKIDK ASMLEEAIEY LKTLQLQVQM MSMGTGMFVP  420
PMMLPAAAAI QHHHMQMAGP MAAAAHFPHL GAAAAMGLAG FGMPGAAFDM PRLAAAAQFP  480
CPMFPAAPPM SMFAPPPPPP FPHAVTTAVE QTPSPPGAAD AGDAPAVKQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363368ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1376160.0AC137616.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0069I13, complete sequence.
GenBankAC1376210.0AC137621.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0111O13, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638282.10.0transcription factor APG isoform X2
SwissprotQ6AT900.0APG_ORYSJ; Transcription factor APG
TrEMBLA0A0E0DLQ10.0A0A0E0DLQ1_9ORYZ; Uncharacterized protein
STRINGOMERI05G02560.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-32phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]