PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G02570.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 532aa    MW: 56157.2 Da    PI: 7.1362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G02570.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-133674071055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +rRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  OMERI05G02570.2 367 QRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 407
                      79******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.494357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-12363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16367428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10367407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-13367411No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MLRGNDTGND LAELLWDNGA PAPLRPRPPP PFQPFTCSAA ATSSPAHDYL FIKNLMRGGG  60
AANHHHHHHH HDDVPWLHYH PVVDDDDDAD ADTAPLPPDY CAALLSGLSD HLPPPAAAAS  120
REDPDPCSSS HGAVVPSTSA VAKQARTSAA GDGGVMNFTF FSRPLQQRPS GGETASASAS  180
AAGTSSVPVE STVVQAATNR LRSTPLFSDQ RMAWLHPPKP SPRAAAPPPP PPLAPTTRHR  240
LDTAAATATV AQRLPPSEAR APDAPPPAAT ATATTSSVCS GNGDRSQLKR RDSHNNQSAE  300
WSASQDELDL DDELAGAHRR SAARSSKRSR TAEVHNLSER HAMHHPQTPR RVMTSSHLAI  360
GLLSSSQRRR DRINEKMRAL QELIPNCNKI DKASMLEEAI EYLKTLQLQV QMMSMGTGMF  420
VPPMMLPAAA AIQHHHMQMA GPMAAAAHFP HLGAAAAMGL AGFGMPGAAF DMPRLAAAAQ  480
FPCPMFPAAP PMSMFAPPPP PPFPHAVTTA VEQTPSPPGA ADAGDAPAVK QA
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6679000.0AB667900.1 Oryza sativa Japonica Group APG mRNA for basic helix-loop-helix protein APG, complete cds.
GenBankAK2879580.0AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638281.10.0transcription factor APG isoform X1
SwissprotQ6AT900.0APG_ORYSJ; Transcription factor APG
TrEMBLA0A0E0DLP90.0A0A0E0DLP9_9ORYZ; Uncharacterized protein
STRINGOMERI05G02560.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-27phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]