PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G02430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 35930.1 Da PI: 5.7641 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.5e-16 | 30 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48 rg+WT eEd llvd+++ +G g+W++ ar+ ++Rt+k+c++rw++yl OMERI05G02430.1 30 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAAdrlrvwtrvgLRRTGKSCRLRWLNYL 87 89******************************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.5e-16 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ OMERI05G02430.1 93 RGNITADEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 136 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.45 | 25 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-29 | 28 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 29 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-14 | 30 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 31 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-9 | 32 | 87 | No hit | No description |
PROSITE profile | PS51294 | 22.527 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-14 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 93 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 95 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.22E-10 | 97 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MDLEMMGMAM SPAMSSATAA ASEDEGDLRR GPWTVEEDML LVDYIANHGE GRWNSLARCA 60 ADRLRVWTRV GLRRTGKSCR LRWLNYLRPD VRRGNITADE QLLILDLHSR WGNRWSKIAQ 120 YLPGRTDNEI KNYWRTRVQK HAKQLRCDVN SKEFRDVVRH VWMPRLVERI QADAAAAAAG 180 DDVAAAAPVS AAAMRSMSSP AGAMYLHHQQ IPLAAGAAMV APAASSEAYH HHGGGGGDTS 240 CSEPSQAAVT MSPDDASSTL RSSSAAAEND TIHGDVLSGS WSELLATTTT IAATGGRDGA 300 ATAGLPDFDE LGDFEDNLWS LEDIWLHQQC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 27 | 134 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638460.1 | 1e-172 | transcription factor MYB2-like | ||||
TrEMBL | A0A0E0DLN1 | 0.0 | A0A0E0DLN1_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA05G0022200.1 | 1e-175 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-76 | myb domain protein 78 |