PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G02200.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 374aa    MW: 40828.6 Da    PI: 5.2742
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G02200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-093073402255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yp++e++ +LA+ +gL+ +q+ +WF N+R ++
  OMERI05G02200.1 307 WPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRH 340
                      59*****************************885 PP
2ELK32.81.5e-11260281122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++Ll+KYsg+L+ L++EF+
  OMERI05G02200.1 260 ELKEMLLKKYSGCLSRLRSEFL 281
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.8E-195397IPR005540KNOX1
PfamPF037902.6E-195594IPR005540KNOX1
SMARTSM012564.0E-27103154IPR005541KNOX2
PfamPF037913.7E-23107153IPR005541KNOX2
SMARTSM011883.6E-6260281IPR005539ELK domain
PfamPF037891.8E-8260281IPR005539ELK domain
PROSITE profilePS5121310.423260280IPR005539ELK domain
PROSITE profilePS5007112.681280343IPR001356Homeobox domain
SMARTSM003892.5E-14282347IPR001356Homeobox domain
SuperFamilySSF466891.15E-19282351IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-27285345IPR009057Homeodomain-like
CDDcd000866.74E-13292344No hitNo description
PfamPF059206.8E-17300339IPR008422Homeobox KN domain
PROSITE patternPS000270318341IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEDLYSIHPG ISRGGGGGGG GAASEASGVA GGGSSPPHPP PPATTAAAAD LTELMKAQIA  60
GHPSYPSLLS AYIECRKVGA PPEVTTLLEE ISREERGGGG ATAGGEIGLD PELDEFMETY  120
CRVLERYKEE LTRPFDEAAS FLTGIHTQLA SLCGGAPPPT DNSALVGQPI LWNLCIILLT  180
DDWALVLFVK RLLLFMVNVV LLPHHLSLIL YMTFCLKLPL ICNIFMQDEM VGSSDDEPCS  240
GDADASDFGQ EHSSRLADHE LKEMLLKKYS GCLSRLRSEF LKKRKKGKLP KDARSALMDW  300
WNTHYRWPYP TEEDKVRLAA MTGLDPKQIN NWFINQRKRH WKPSEDMRFA LMEGVTGGSS  360
SGTTLYFDTG TIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275284LRSEFLKKRK
2281285KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288850.0AB028885.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH71, complete cds.
GenBankAF0501800.0AF050180.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn2) mRNA, complete cds.
GenBankAK1118780.0AK111878.1 Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020397912.11e-154liguleless 4 isoform X1
SwissprotQ9FP291e-115KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0E0DLI90.0A0A0E0DLI9_9ORYZ; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-50KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]