PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI05G01980.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 1684aa MW: 182733 Da PI: 7.1056

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI05G01980.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	831	873	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W +eE e++ + + +G++ +++I++ ++ ++t +c+++++k+ OMERI05G01980.3 831 PWIQEEKEIFMEKLATFGKD-FSKISSFLQ-HKTTADCIEFYYKH 873 899*************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.77E-13	814	876	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.547	827	878	IPR017884	SANT domain
SMART	SM00717	4.8E-7	828	876	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-5	831	873	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-5	831	875	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.728	1036	1087	IPR017884	SANT domain
SMART	SM00717	6.6E-4	1037	1085	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.56E-8	1041	1087	IPR009057	Homeodomain-like
CDD	cd00167	0.00129	1041	1079	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1684 aa Download sequence Send to blast
MRRPELGIRA GWTTTTTTTT PWMPPPPPDR RDFLYRDGRR HDGDPLPPPA PTPPRWRDSP 60 YHPPPPPPPP LRDHSRPSPR RTPSSASSGR PFAYKSSDLM LPPPPPPPWT SPPPLIRRNR 120 SAISDGYYRQ GGGSYDRSYP DESLGYTPSR SDRYWLDDDS GGGYKGFSRY GGGGGGSRRD 180 GRDMRGSYRR SPFRGYGSDF SRNHQEHPPP PLRRSPLRSV AVPMSYDPPG DRADRGDRDH 240 HHRVTPWRPL RRRESRSDAA DAAGAGPVPV GQAAAAAASE KDVSARSSAV AAPQVSEEEA 300 PRKKPRLGWG QGLAKYEKQK VQGPAESAEA VAEGSPTATE QKGVTHTPAP APCVSPVTAP 360 SPAPCASPVA APSPAPCASP VAAPSPALPC KSPVPEDKSC ELTANTVTEF NKNIPGPDVQ 420 ACNNEVPTKL DQLEGDPIDS LAKVLSELVQ HEDSCSGDSK RLSNVSKLLL LKESISKELE 480 KTELEIDSLE GELKSVNVEA RNRTLKDPPT AVTYAQNPLP SPVKEQGELT PSPKISMEQD 540 ADVKGSELME VETAQAHNAK AVSSEESVAC PGVAPGQVPA AADVIPSDPC GKTGSGIDVD 600 IEQREENPCQ ENFNAMKADG SSDLATRPCS YRDVKYNLMD QIIAANRSEA KKNSQLLFKP 660 VPADRSNLDL LASSYLSSQM KNDVIIKKKH AILKNRQRFK EQILTFKFRV LRHLWKEDVR 720 LLSVRKQRSK SHKRTDQSNR SSQSGSQRQR SSNRSRLAVP AGNLSTFPIT EMSGVAKKLF 780 SEFQLKRCRN YLKMPALIVD EKEKAGAKFV SKNGLVEDPV SVEKERALIN PWIQEEKEIF 840 MEKLATFGKD FSKISSFLQH KTTADCIEFY YKHHKSDSFR EVKKLLDLRQ QQQPASNYLG 900 AVSGKKWNPE ANAASLDMLG VATEVAAQGL EYVNEVKKNS AKSILRTVCG VDNSTKGSEK 960 DSVGDVSLHE RESVAADVLA GICGTLSPEG MGSCITSSAD PGQKIGIISR MEHLLTPEAD 1020 KNFDDDGTLS DQECEVDIVD WNDDEKSSFI EAMNRYGKDF ARISSYVKSK SFEQCKVFFS 1080 KARKSLGLDL IHQGAADAGF PTGDANGGRS GTDGACIAEM DSAICSAQSC PKVEIDACPV 1140 SDGEIQGHNP LSYIASRQPE ADKSNMPDVV DINVEEGESK AEKDCSILVD HKQLREDTNQ 1200 TSCACIDINC PESTDKLQDI EDVTPVNMHG DDLMATSVEQ AVAAHVESRS SLHSEGIGID 1260 FSRIEGCSHE STIGKGGKST PSVCLPAANG VSKENIIHFS NMDGASSISP AFTSNYQQSK 1320 LADPIQSKPK PLTPKDLMPV QFSSSLPDPT SICFEGIAAI TTPNFEDHGN RASIASGAKD 1380 VNMFPTFKDQ SSNRHDALFS NVDGYMQQRR NNHFGTEVCG LSESTGISQS DQFTVSKFQN 1440 GRPSSLGLSN GNLGVLSTGR REEAREGLFR PCSVKTSAGN EEQQKRPGDV KLFGQILSHQ 1500 SSLQSSGSSV HGSKSKPPSP KVDKSASSRL LSNPRERLVY SSRPPITANL GLEERAMRSF 1560 DHMDGRTIQP EPMVMVAKCQ RPSAGVPVYS TKNGALSVFA EFQQPSMPPH TSDHKLLENF 1620 ADLHKRNGIE LLSGFQQPGR LGGAGVLVSG VSDPVAALKA QYGSGSKMLS SSNDVDTWKD 1680 IGSR

Sequence ? help Back to Top

Protein Sequence Length: 1684 aa Download sequence Send to blast

MRRPELGIRA GWTTTTTTTT PWMPPPPPDR RDFLYRDGRR HDGDPLPPPA PTPPRWRDSP  60
YHPPPPPPPP LRDHSRPSPR RTPSSASSGR PFAYKSSDLM LPPPPPPPWT SPPPLIRRNR  120
SAISDGYYRQ GGGSYDRSYP DESLGYTPSR SDRYWLDDDS GGGYKGFSRY GGGGGGSRRD  180
GRDMRGSYRR SPFRGYGSDF SRNHQEHPPP PLRRSPLRSV AVPMSYDPPG DRADRGDRDH  240
HHRVTPWRPL RRRESRSDAA DAAGAGPVPV GQAAAAAASE KDVSARSSAV AAPQVSEEEA  300
PRKKPRLGWG QGLAKYEKQK VQGPAESAEA VAEGSPTATE QKGVTHTPAP APCVSPVTAP  360
SPAPCASPVA APSPAPCASP VAAPSPALPC KSPVPEDKSC ELTANTVTEF NKNIPGPDVQ  420
ACNNEVPTKL DQLEGDPIDS LAKVLSELVQ HEDSCSGDSK RLSNVSKLLL LKESISKELE  480
KTELEIDSLE GELKSVNVEA RNRTLKDPPT AVTYAQNPLP SPVKEQGELT PSPKISMEQD  540
ADVKGSELME VETAQAHNAK AVSSEESVAC PGVAPGQVPA AADVIPSDPC GKTGSGIDVD  600
IEQREENPCQ ENFNAMKADG SSDLATRPCS YRDVKYNLMD QIIAANRSEA KKNSQLLFKP  660
VPADRSNLDL LASSYLSSQM KNDVIIKKKH AILKNRQRFK EQILTFKFRV LRHLWKEDVR  720
LLSVRKQRSK SHKRTDQSNR SSQSGSQRQR SSNRSRLAVP AGNLSTFPIT EMSGVAKKLF  780
SEFQLKRCRN YLKMPALIVD EKEKAGAKFV SKNGLVEDPV SVEKERALIN PWIQEEKEIF  840
MEKLATFGKD FSKISSFLQH KTTADCIEFY YKHHKSDSFR EVKKLLDLRQ QQQPASNYLG  900
AVSGKKWNPE ANAASLDMLG VATEVAAQGL EYVNEVKKNS AKSILRTVCG VDNSTKGSEK  960
DSVGDVSLHE RESVAADVLA GICGTLSPEG MGSCITSSAD PGQKIGIISR MEHLLTPEAD  1020
KNFDDDGTLS DQECEVDIVD WNDDEKSSFI EAMNRYGKDF ARISSYVKSK SFEQCKVFFS  1080
KARKSLGLDL IHQGAADAGF PTGDANGGRS GTDGACIAEM DSAICSAQSC PKVEIDACPV  1140
SDGEIQGHNP LSYIASRQPE ADKSNMPDVV DINVEEGESK AEKDCSILVD HKQLREDTNQ  1200
TSCACIDINC PESTDKLQDI EDVTPVNMHG DDLMATSVEQ AVAAHVESRS SLHSEGIGID  1260
FSRIEGCSHE STIGKGGKST PSVCLPAANG VSKENIIHFS NMDGASSISP AFTSNYQQSK  1320
LADPIQSKPK PLTPKDLMPV QFSSSLPDPT SICFEGIAAI TTPNFEDHGN RASIASGAKD  1380
VNMFPTFKDQ SSNRHDALFS NVDGYMQQRR NNHFGTEVCG LSESTGISQS DQFTVSKFQN  1440
GRPSSLGLSN GNLGVLSTGR REEAREGLFR PCSVKTSAGN EEQQKRPGDV KLFGQILSHQ  1500
SSLQSSGSSV HGSKSKPPSP KVDKSASSRL LSNPRERLVY SSRPPITANL GLEERAMRSF  1560
DHMDGRTIQP EPMVMVAKCQ RPSAGVPVYS TKNGALSVFA EFQQPSMPPH TSDHKLLENF  1620
ADLHKRNGIE LLSGFQQPGR LGGAGVLVSG VSDPVAALKA QYGSGSKMLS SSNDVDTWKD  1680
IGSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	7e-16	789	880	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	7e-16	789	880	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070653	0.0	AK070653.1 Oryza sativa Japonica Group cDNA clone:J023055D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639126.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639127.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639128.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639129.1	0.0	uncharacterized protein LOC9268524
TrEMBL	A0A0E0DLF5	0.0	A0A0E0DLF5_9ORYZ; Uncharacterized protein
STRING	OMERI05G01950.3	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	7e-76	MYB family protein