PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G01150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 31541.7 Da PI: 6.7802 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.8e-14 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv v+++G ++W+ a+ g++Rt+k+c++rw +yl OMERI05G01150.1 45 KGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 92 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.7e-16 | 98 | 143 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr T++E+ l+++++ q+G++ W++Iar ++ gRt++++k++w++++ OMERI05G01150.1 98 RGRITADEERLILHLHSQWGSR-WSRIARSLP-GRTDNEIKNFWRTHM 143 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.082 | 40 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.9E-27 | 42 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 44 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-13 | 45 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 46 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.73E-9 | 47 | 92 | No hit | No description |
PROSITE profile | PS51294 | 22.894 | 93 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-15 | 97 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 98 | 142 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 100 | 145 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.89E-10 | 102 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAEEEMMMGM MCGSGGNEMM KTKMKKKSRE EGEEEEVSGG GRMRKGPWTE QEDVQLVWFV 60 RLFGERRWDF LAKVSGLKRT GKSCRLRWVN YLHPGLKRGR ITADEERLIL HLHSQWGSRW 120 SRIARSLPGR TDNEIKNFWR THMRKIAHHA KKKINTPSPA PTTSSGSLSS SLTSTTTTAT 180 TTMATAAALQ ESSSCCGGDD EAVDQLVAAA TTPASQLQTM DYTMDQLWND IAAAEADTSC 240 YDAVAAVMAS PPSPVWEFCT DYSLWRIDDE EYYKKMLDAS Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 45 | 145 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC093921 | 0.0 | AC093921.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0041A22, complete sequence. | |||
GenBank | AC108504 | 0.0 | AC108504.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1654_B10, complete sequence. | |||
GenBank | AK111634 | 0.0 | AK111634.1 Oryza sativa Japonica Group cDNA clone:J013119H17, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639553.1 | 1e-119 | transcription factor MYB48 | ||||
Swissprot | Q4JL76 | 2e-65 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A0E0DL46 | 0.0 | A0A0E0DL46_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G01120.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-61 | myb domain protein 59 |
Publications ? help Back to Top | |||
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