PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G25730.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 295aa    MW: 33502.5 Da    PI: 6.3721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G25730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1546.6e-4891402128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkya..tgkrknratksgyWkatgkdke 91 
                      +pGfrFhPt+eelv +yL++kv g++ +   +i+evd+y+++PwdL  +++++++e+  yfFs +d+ky+  tg+r+nrat++g+Wkatg+dk+
  OMERI04G25730.1   9 APGFRFHPTEEELVGYYLARKVVGQQDDG--IIQEVDLYTTQPWDLL-QAQQHDQECycYFFSYKDRKYPsgTGTRTNRATAAGFWKATGRDKP 99 
                      79************************666..8**************7.445555544449*********966689******************* PP

              NAM  92 vlskkgel....vglkktLvfykgrapkgektdWvmheyrl 128
                      vls++++l    +g++ktLvfy+grap+g+ktdW++heyrl
  OMERI04G25730.1 100 VLSSRSSLspgvIGMRKTLVFYRGRAPNGSKTDWIIHEYRL 140
                      ***855445666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-504161IPR003441NAC domain
PROSITE profilePS5100551.9158161IPR003441NAC domain
PfamPF023652.3E-2510140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEEEWYRVAP GFRFHPTEEE LVGYYLARKV VGQQDDGIIQ EVDLYTTQPW DLLQAQQHDQ  60
ECYCYFFSYK DRKYPSGTGT RTNRATAAGF WKATGRDKPV LSSRSSLSPG VIGMRKTLVF  120
YRGRAPNGSK TDWIIHEYRL VVADHHQQDG SCWVVCRAFR KPTATLQHQL HLHRPPPLLH  180
HRHHPGYYDD QYLYPPPPPA AAAAGGLLCS PALDMELEEE EEEDESKMMI LNNDNIPLVV  240
SPTTVHTQGT GGDIINDATS APAAADHRRH PELLAAGPID WNFLDTLLHH HHFTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-38816115168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066560.0AL606656.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635310.11e-134NAC domain-containing protein 105
TrEMBLA0A0E0DKH70.0A0A0E0DKH7_9ORYZ; Uncharacterized protein
STRINGOGLUM04G30580.11e-148(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1902799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.13e-50vascular related NAC-domain protein 7