PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G25580.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 1133aa MW: 127470 Da PI: 6.7092 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.1 | 4.4e-50 | 461 | 589 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v OMERI04G25580.4 461 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 553 79****************************.89**************95357788999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle OMERI04G25580.4 554 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 589 **.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03016 | 9.3E-42 | 53 | 340 | IPR004263 | Exostosin-like |
SuperFamily | SSF101941 | 1.31E-60 | 452 | 611 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.488 | 461 | 611 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-26 | 462 | 588 | IPR003441 | NAC domain |
SMART | SM00177 | 0.008 | 926 | 1103 | No hit | No description |
Gene3D | G3DSA:3.40.50.300 | 7.2E-67 | 928 | 1133 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS51419 | 34.219 | 933 | 1133 | No hit | No description |
SuperFamily | SSF52540 | 2.0E-56 | 933 | 1104 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00173 | 1.7E-31 | 935 | 1102 | No hit | No description |
TIGRFAMs | TIGR00231 | 4.5E-28 | 936 | 1094 | IPR005225 | Small GTP-binding protein domain |
SMART | SM00175 | 4.8E-102 | 938 | 1102 | No hit | No description |
CDD | cd01863 | 5.26E-99 | 938 | 1099 | No hit | No description |
PRINTS | PR00449 | 6.2E-35 | 938 | 959 | No hit | No description |
Pfam | PF00071 | 7.7E-56 | 939 | 1100 | IPR001806 | Small GTPase superfamily |
SMART | SM00174 | 6.0E-15 | 940 | 1102 | No hit | No description |
SMART | SM00176 | 2.1E-7 | 943 | 1129 | No hit | No description |
PRINTS | PR00449 | 6.2E-35 | 960 | 976 | No hit | No description |
PRINTS | PR00449 | 6.2E-35 | 978 | 1000 | No hit | No description |
PRINTS | PR00449 | 6.2E-35 | 1042 | 1055 | No hit | No description |
PRINTS | PR00449 | 6.2E-35 | 1077 | 1099 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007264 | Biological Process | small GTPase mediated signal transduction | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005768 | Cellular Component | endosome | ||||
GO:0005802 | Cellular Component | trans-Golgi network | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005525 | Molecular Function | GTP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1133 aa Download sequence Send to blast |
MRSSHQPLCT RAHQAAALLL AAATFFLTRL LDRSTLSAPP PPCAAPYSPW PHRDLRIYVY 60 AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTLDKD EADLFFVPTY 120 VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR 180 SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR 240 AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL 300 RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM 360 IGRGREIRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH 420 DWRTPHHHLL SAAAPHFLPS PTATTSYRQR SILLSMAKTS LPPGFRFHPT DVELTVYYLK 480 RKLLGKHLRC NAVSELDLYK FAPWDLPEKS SLQSKDREWY FFCPRDRKYS SGSRTNRSTE 540 AGYWKATGKD RPVIYNSQTV GMKRTLVFHL GKPPRGDRTD WVMYEYRLED KELSASGVKL 600 DACVLCKIFQ KSGPGPKIGE QYGAPFNEDD WNEANGELSS FAFSVPPCAL ESSNGRLNTA 660 GQQLAVSDNI GSSLDHCSET NDKIAVGGCG TTSPSVPFDS IHTQQLAEII SCFSTDLLNS 720 VSRDGSLPGS TADYDNDNEV SSDDGEAIFN ELDELDSQPD ESISNHCNSC GEDLIPPTLE 780 VLKTEQYLEL NDLSFSLADD PDPCNLLLTT NLSDQNHPEL ETRYGSYTYS LNQTERAKFG 840 EGRKGTTETS INADMVHILV MTTMAISACW SSYWVVSLSD LWPSLLVRWK IHVDIRIRQP 900 LPSHPPTSII PYEEVIMDSS SSSSSTQAQS QPDFDYLFKL LLIGDSGVGK SSLLLRFTSD 960 SFEDLSPTIG VDFKVKMVNT GGKKLKLAIW DTAGQERFRT LTSSYYRGAQ GIIMVYDVTR 1020 RETFTNLSDI WAKEIDLYST NQDCIKMLVG NKVDKESERA VTKKEGIEFA REYGCLFLEC 1080 SAKTKVNVEQ CFEELVLKIL DTPSLLADAS SGAKKNIFKQ KPPEADAAAS SCC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x3s_A | 7e-62 | 923 | 1105 | 1 | 182 | Ras-related protein Rab-18 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064646 | 0.0 | AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0DKF3 | 0.0 | A0A0E0DKF3_9ORYZ; Uncharacterized protein | ||||
STRING | ONIVA04G10650.2 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 2e-77 | NAC domain containing protein 82 |