PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G25580.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 1133aa    MW: 127470 Da    PI: 6.7092
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G25580.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.4e-504615891129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v
  OMERI04G25580.4 461 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 553
                      79****************************.89**************95357788999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  OMERI04G25580.4 554 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 589
                      **.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030169.3E-4253340IPR004263Exostosin-like
SuperFamilySSF1019411.31E-60452611IPR003441NAC domain
PROSITE profilePS5100556.488461611IPR003441NAC domain
PfamPF023659.6E-26462588IPR003441NAC domain
SMARTSM001770.0089261103No hitNo description
Gene3DG3DSA:3.40.50.3007.2E-679281133IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5141934.2199331133No hitNo description
SuperFamilySSF525402.0E-569331104IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM001731.7E-319351102No hitNo description
TIGRFAMsTIGR002314.5E-289361094IPR005225Small GTP-binding protein domain
SMARTSM001754.8E-1029381102No hitNo description
CDDcd018635.26E-999381099No hitNo description
PRINTSPR004496.2E-35938959No hitNo description
PfamPF000717.7E-569391100IPR001806Small GTPase superfamily
SMARTSM001746.0E-159401102No hitNo description
SMARTSM001762.1E-79431129No hitNo description
PRINTSPR004496.2E-35960976No hitNo description
PRINTSPR004496.2E-359781000No hitNo description
PRINTSPR004496.2E-3510421055No hitNo description
PRINTSPR004496.2E-3510771099No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005634Cellular Componentnucleus
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1133 aa     Download sequence    Send to blast
MRSSHQPLCT RAHQAAALLL AAATFFLTRL LDRSTLSAPP PPCAAPYSPW PHRDLRIYVY  60
AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTLDKD EADLFFVPTY  120
VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR  180
SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR  240
AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL  300
RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM  360
IGRGREIRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH  420
DWRTPHHHLL SAAAPHFLPS PTATTSYRQR SILLSMAKTS LPPGFRFHPT DVELTVYYLK  480
RKLLGKHLRC NAVSELDLYK FAPWDLPEKS SLQSKDREWY FFCPRDRKYS SGSRTNRSTE  540
AGYWKATGKD RPVIYNSQTV GMKRTLVFHL GKPPRGDRTD WVMYEYRLED KELSASGVKL  600
DACVLCKIFQ KSGPGPKIGE QYGAPFNEDD WNEANGELSS FAFSVPPCAL ESSNGRLNTA  660
GQQLAVSDNI GSSLDHCSET NDKIAVGGCG TTSPSVPFDS IHTQQLAEII SCFSTDLLNS  720
VSRDGSLPGS TADYDNDNEV SSDDGEAIFN ELDELDSQPD ESISNHCNSC GEDLIPPTLE  780
VLKTEQYLEL NDLSFSLADD PDPCNLLLTT NLSDQNHPEL ETRYGSYTYS LNQTERAKFG  840
EGRKGTTETS INADMVHILV MTTMAISACW SSYWVVSLSD LWPSLLVRWK IHVDIRIRQP  900
LPSHPPTSII PYEEVIMDSS SSSSSTQAQS QPDFDYLFKL LLIGDSGVGK SSLLLRFTSD  960
SFEDLSPTIG VDFKVKMVNT GGKKLKLAIW DTAGQERFRT LTSSYYRGAQ GIIMVYDVTR  1020
RETFTNLSDI WAKEIDLYST NQDCIKMLVG NKVDKESERA VTKKEGIEFA REYGCLFLEC  1080
SAKTKVNVEQ CFEELVLKIL DTPSLLADAS SGAKKNIFKQ KPPEADAAAS SCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x3s_A7e-6292311051182Ras-related protein Rab-18
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646460.0AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DKF30.0A0A0E0DKF3_9ORYZ; Uncharacterized protein
STRINGONIVA04G10650.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.42e-77NAC domain containing protein 82