PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G25580.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 678aa    MW: 75459.7 Da    PI: 4.7304
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G25580.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.12e-5061341129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v
  OMERI04G25580.3   6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 98 
                      79****************************.89**************95357788999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  OMERI04G25580.3  99 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134
                      **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-603156IPR003441NAC domain
PROSITE profilePS5100556.4886156IPR003441NAC domain
PfamPF023654.5E-267133IPR003441NAC domain
SMARTSM001770.008471648No hitNo description
Gene3DG3DSA:3.40.50.3002.9E-67473678IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525408.56E-57478649IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5141934.219478678No hitNo description
SMARTSM001731.7E-31480647No hitNo description
TIGRFAMsTIGR002312.0E-28481639IPR005225Small GTP-binding protein domain
PRINTSPR004495.8E-36483504No hitNo description
CDDcd018634.34E-102483644No hitNo description
SMARTSM001754.8E-102483647No hitNo description
PfamPF000713.4E-56484645IPR001806Small GTPase superfamily
SMARTSM001746.0E-15485647No hitNo description
SMARTSM001762.1E-7488674No hitNo description
PRINTSPR004495.8E-36505521No hitNo description
PRINTSPR004495.8E-36523545No hitNo description
PRINTSPR004495.8E-36587600No hitNo description
PRINTSPR004495.8E-36622644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005634Cellular Componentnucleus
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAVSE LDLYKFAPWD LPEKSSLQSK  60
DREWYFFCPR DRKYSSGSRT NRSTEAGYWK ATGKDRPVIY NSQTVGMKRT LVFHLGKPPR  120
GDRTDWVMYE YRLEDKELSA SGVKLDACVL CKIFQKSGPG PKIGEQYGAP FNEDDWNEAN  180
GELSSFAFSV PPCALESSNG RLNTAGQQLA VSDNIGSSLD HCSETNDKIA VGGCGTTSPS  240
VPFDSIHTQQ LAEIISCFST DLLNSVSRDG SLPGSTADYD NDNEVSSDDG EAIFNELDEL  300
DSQPDESISN HCNSCGEDLI PPTLEVLKTE QYLELNDLSF SLADDPDPCN LLLTTNLSDQ  360
NHPELETRYG SYTYSLNQTE RAKFGEGRKG TTETSINADM VHILVMTTMA ISACWSSYWV  420
VSLSDLWPSL LVRWKIHVDI RIRQPLPSHP PTSIIPYEEV IMDSSSSSSS TQAQSQPDFD  480
YLFKLLLIGD SGVGKSSLLL RFTSDSFEDL SPTIGVDFKV KMVNTGGKKL KLAIWDTAGQ  540
ERFRTLTSSY YRGAQGIIMV YDVTRRETFT NLSDIWAKEI DLYSTNQDCI KMLVGNKVDK  600
ESERAVTKKE GIEFAREYGC LFLECSAKTK VNVEQCFEEL VLKILDTPSL LADASSGAKK  660
NIFKQKPPEA DAAASSCC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x3s_A2e-634696502182Ras-related protein Rab-18
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681530.0AK068153.1 Oryza sativa Japonica Group cDNA clone:J013131L02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823524.11e-177NAC domain-containing protein 82-like
RefseqXP_025823525.11e-177NAC domain-containing protein 82-like
RefseqXP_025823526.11e-177NAC domain-containing protein 82-like
RefseqXP_025823527.11e-177NAC domain-containing protein 82-like
TrEMBLA0A0E0DKF20.0A0A0E0DKF2_9ORYZ; Uncharacterized protein
STRINGOMERI04G25270.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-80NAC domain containing protein 82