PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G25580.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 1191aa MW: 133126 Da PI: 7.0815 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161 | 4.7e-50 | 519 | 647 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v OMERI04G25580.2 519 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 611 79****************************.89**************95357788999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle OMERI04G25580.2 612 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 647 **.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03016 | 1.0E-41 | 53 | 340 | IPR004263 | Exostosin-like |
SuperFamily | SSF101941 | 1.2E-60 | 507 | 669 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.488 | 519 | 669 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-25 | 520 | 646 | IPR003441 | NAC domain |
SMART | SM00177 | 0.008 | 984 | 1161 | No hit | No description |
Gene3D | G3DSA:3.40.50.300 | 7.7E-67 | 986 | 1191 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS51419 | 34.219 | 991 | 1191 | No hit | No description |
SuperFamily | SSF52540 | 2.18E-56 | 991 | 1162 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00173 | 1.7E-31 | 993 | 1160 | No hit | No description |
TIGRFAMs | TIGR00231 | 4.8E-28 | 994 | 1152 | IPR005225 | Small GTP-binding protein domain |
CDD | cd01863 | 4.00E-99 | 996 | 1157 | No hit | No description |
SMART | SM00175 | 4.8E-102 | 996 | 1160 | No hit | No description |
PRINTS | PR00449 | 7.9E-35 | 996 | 1017 | No hit | No description |
Pfam | PF00071 | 8.3E-56 | 997 | 1158 | IPR001806 | Small GTPase superfamily |
SMART | SM00174 | 6.0E-15 | 998 | 1160 | No hit | No description |
SMART | SM00176 | 2.1E-7 | 1001 | 1187 | No hit | No description |
PRINTS | PR00449 | 7.9E-35 | 1018 | 1034 | No hit | No description |
PRINTS | PR00449 | 7.9E-35 | 1036 | 1058 | No hit | No description |
PRINTS | PR00449 | 7.9E-35 | 1100 | 1113 | No hit | No description |
PRINTS | PR00449 | 7.9E-35 | 1135 | 1157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007264 | Biological Process | small GTPase mediated signal transduction | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005768 | Cellular Component | endosome | ||||
GO:0005802 | Cellular Component | trans-Golgi network | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005525 | Molecular Function | GTP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1191 aa Download sequence Send to blast |
MRSSHQPLCT RAHQAAALLL AAATFFLTRL LDRSTLSAPP PPCAAPYSPW PHRDLRIYVY 60 AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTLDKD EADLFFVPTY 120 VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR 180 SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR 240 AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL 300 RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM 360 IGRGREIRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH 420 DWRTPIWGGG GGRATATGAA CLSPLRAASF QFHLAASPRQ HTSVLRSIAL SSPLNLSSLP 480 CRTASASAPP SPLRGGAAFP SLADRHHQLL RPSMAKTSLP PGFRFHPTDV ELTVYYLKRK 540 LLGKHLRCNA VSELDLYKFA PWDLPEKSSL QSKDREWYFF CPRDRKYSSG SRTNRSTEAG 600 YWKATGKDRP VIYNSQTVGM KRTLVFHLGK PPRGDRTDWV MYEYRLEDKE LSASGVKLDA 660 CVLCKIFQKS GPGPKIGEQY GAPFNEDDWN EANGELSSFA FSVPPCALES SNGRLNTAGQ 720 QLAVSDNIGS SLDHCSETND KIAVGGCGTT SPSVPFDSIH TQQLAEIISC FSTDLLNSVS 780 RDGSLPGSTA DYDNDNEVSS DDGEAIFNEL DELDSQPDES ISNHCNSCGE DLIPPTLEVL 840 KTEQYLELND LSFSLADDPD PCNLLLTTNL SDQNHPELET RYGSYTYSLN QTERAKFGEG 900 RKGTTETSIN ADMVHILVMT TMAISACWSS YWVVSLSDLW PSLLVRWKIH VDIRIRQPLP 960 SHPPTSIIPY EEVIMDSSSS SSSTQAQSQP DFDYLFKLLL IGDSGVGKSS LLLRFTSDSF 1020 EDLSPTIGVD FKVKMVNTGG KKLKLAIWDT AGQERFRTLT SSYYRGAQGI IMVYDVTRRE 1080 TFTNLSDIWA KEIDLYSTNQ DCIKMLVGNK VDKESERAVT KKEGIEFARE YGCLFLECSA 1140 KTKVNVEQCF EELVLKILDT PSLLADASSG AKKNIFKQKP PEADAAASSC C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x3s_A | 8e-62 | 982 | 1163 | 2 | 182 | Ras-related protein Rab-18 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064646 | 0.0 | AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0DKF1 | 0.0 | A0A0E0DKF1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G30770.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9932 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 3e-77 | NAC domain containing protein 82 |