PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G25580.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 1191aa    MW: 133126 Da    PI: 7.0815
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G25580.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1614.7e-505196471129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v
  OMERI04G25580.2 519 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 611
                      79****************************.89**************95357788999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  OMERI04G25580.2 612 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 647
                      **.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030161.0E-4153340IPR004263Exostosin-like
SuperFamilySSF1019411.2E-60507669IPR003441NAC domain
PROSITE profilePS5100556.488519669IPR003441NAC domain
PfamPF023651.0E-25520646IPR003441NAC domain
SMARTSM001770.0089841161No hitNo description
Gene3DG3DSA:3.40.50.3007.7E-679861191IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5141934.2199911191No hitNo description
SuperFamilySSF525402.18E-569911162IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM001731.7E-319931160No hitNo description
TIGRFAMsTIGR002314.8E-289941152IPR005225Small GTP-binding protein domain
CDDcd018634.00E-999961157No hitNo description
SMARTSM001754.8E-1029961160No hitNo description
PRINTSPR004497.9E-359961017No hitNo description
PfamPF000718.3E-569971158IPR001806Small GTPase superfamily
SMARTSM001746.0E-159981160No hitNo description
SMARTSM001762.1E-710011187No hitNo description
PRINTSPR004497.9E-3510181034No hitNo description
PRINTSPR004497.9E-3510361058No hitNo description
PRINTSPR004497.9E-3511001113No hitNo description
PRINTSPR004497.9E-3511351157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005634Cellular Componentnucleus
GO:0005768Cellular Componentendosome
GO:0005802Cellular Componenttrans-Golgi network
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1191 aa     Download sequence    Send to blast
MRSSHQPLCT RAHQAAALLL AAATFFLTRL LDRSTLSAPP PPCAAPYSPW PHRDLRIYVY  60
AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTLDKD EADLFFVPTY  120
VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR  180
SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR  240
AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL  300
RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM  360
IGRGREIRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH  420
DWRTPIWGGG GGRATATGAA CLSPLRAASF QFHLAASPRQ HTSVLRSIAL SSPLNLSSLP  480
CRTASASAPP SPLRGGAAFP SLADRHHQLL RPSMAKTSLP PGFRFHPTDV ELTVYYLKRK  540
LLGKHLRCNA VSELDLYKFA PWDLPEKSSL QSKDREWYFF CPRDRKYSSG SRTNRSTEAG  600
YWKATGKDRP VIYNSQTVGM KRTLVFHLGK PPRGDRTDWV MYEYRLEDKE LSASGVKLDA  660
CVLCKIFQKS GPGPKIGEQY GAPFNEDDWN EANGELSSFA FSVPPCALES SNGRLNTAGQ  720
QLAVSDNIGS SLDHCSETND KIAVGGCGTT SPSVPFDSIH TQQLAEIISC FSTDLLNSVS  780
RDGSLPGSTA DYDNDNEVSS DDGEAIFNEL DELDSQPDES ISNHCNSCGE DLIPPTLEVL  840
KTEQYLELND LSFSLADDPD PCNLLLTTNL SDQNHPELET RYGSYTYSLN QTERAKFGEG  900
RKGTTETSIN ADMVHILVMT TMAISACWSS YWVVSLSDLW PSLLVRWKIH VDIRIRQPLP  960
SHPPTSIIPY EEVIMDSSSS SSSTQAQSQP DFDYLFKLLL IGDSGVGKSS LLLRFTSDSF  1020
EDLSPTIGVD FKVKMVNTGG KKLKLAIWDT AGQERFRTLT SSYYRGAQGI IMVYDVTRRE  1080
TFTNLSDIWA KEIDLYSTNQ DCIKMLVGNK VDKESERAVT KKEGIEFARE YGCLFLECSA  1140
KTKVNVEQCF EELVLKILDT PSLLADASSG AKKNIFKQKP PEADAAASSC C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x3s_A8e-6298211632182Ras-related protein Rab-18
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646460.0AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DKF10.0A0A0E0DKF1_9ORYZ; Uncharacterized protein
STRINGOGLUM04G30770.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP993277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-77NAC domain containing protein 82