PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G24630.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1739aa    MW: 192791 Da    PI: 6.1841
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G24630.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.13e-22157258199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  OMERI04G24630.5 157 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 246
                      99***********************9*****86555544..8************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OMERI04G24630.5 247 EKNQLLLGIRRA 258
                      99999****997 PP
2B370.13e-2210571158199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85  
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  OMERI04G24630.5 1057 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 1144
                       99***********************9*****86555544..8************************************************.. PP

                       SSSEE..EEEEE-S CS
               B3   86 grsefelvvkvfrk 99  
                       ++++ +l+++++r+
  OMERI04G24630.5 1145 WNEKNQLLLGIRRA 1158
                       8899999****997 PP
3Auxin_resp111.39.6e-37283366183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  OMERI04G24630.5 283 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 366
                      79*******************************986599******************************************985 PP
4Auxin_resp111.39.6e-3711831266183
       Auxin_resp    1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83  
                       aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  OMERI04G24630.5 1183 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 1266
                       79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-47142286IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-41149272IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-20156257No hitNo description
PROSITE profilePS5086312.224157259IPR003340B3 DNA binding domain
PfamPF023622.0E-20157258IPR003340B3 DNA binding domain
SMARTSM010191.4E-23157259IPR003340B3 DNA binding domain
PfamPF065074.0E-32283366IPR010525Auxin response factor
SuperFamilySSF542775.89E-6736811No hitNo description
PROSITE profilePS5174521.572740828IPR000270PB1 domain
SuperFamilySSF1019362.22E-4710421186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-4110491172IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-2010561157No hitNo description
PfamPF023622.0E-2010571158IPR003340B3 DNA binding domain
PROSITE profilePS5086312.22410571159IPR003340B3 DNA binding domain
SMARTSM010191.4E-2310571159IPR003340B3 DNA binding domain
PfamPF065074.0E-3211831266IPR010525Auxin response factor
PfamPF023094.1E-716331724IPR033389AUX/IAA domain
SuperFamilySSF542773.73E-716361715No hitNo description
PROSITE profilePS5174524.03716401724IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1739 aa     Download sequence    Send to blast
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEEKKCL NSELWHACAG  60
PLVCLPTVGT RVVYFPQGHS EQVAASTNKE VEGHIPNYPN LPAQLICQLH DVTMHADVET  120
DEVYAQMTLQ PLNPQEQNDA YLPAEMGIMS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE  180
RVFPPLDFTQ QPPAQELIAR DIHDIEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS  240
VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR  300
ASPSEFVIPL SKYIKAVFHT RISVGMRFRM LFETEESSVR RYMGTITEVS DADPVRWPSS  360
YWRSVKVGWD ESTAGERPPR VSLWEIEPLT TFPMYPSLFP LRVKHPWYSG VASLHDDSNA  420
LMWLRGVAGE GGFQSLNFQS PGIGSWGQQR LHPSLLSSDH DQYQAVVAAA AASQSGGYLK  480
QQFLHLQQPM QSPQEHCNLN PLLQQQILQQ ASQQQIINPD AQNIQTMLSP SAIQQQLQQL  540
QQMQQVQNDQ KQKIQPDQSY QVPTSAVLPS PTSLPSHLRE KFGFSDPNAN SSSFITSSSS  600
DNMLDSSFLQ GSSKAVDLSR FNQPVASEQQ QQQQAWKQKF MGSQSVSFGG SVLHNSPTSK  660
DGSVENKIGR DVQNQSLFSP QVDSSSLLYN MVPNLTSNVS DGNLSTIPSG STYLQNAMYG  720
CLDDSSGLLQ NTGENDPATR TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL  780
DDPDRSGWQL VFVDRENDVL LLGDDPWELR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP  840
APPEEGGWLG LFPPLRFAVH FVSLLVWLMT RSASAAAAAA AEKKCLNSEL WHACAGPLVC  900
LPTVGTRVVY FPQGHSEQVR LSSPPQPSRG RACFASLSLS LLVSLVSDAG ELAYVKVAAS  960
TNKEVEGHIP NYPNLPAQLI CQLHDVTMHA DVETDEVYAQ MTLQPLNPVR RLGFLHDVCS  1020
AELLMVWRSE IFYAQEQNDA YLPAEMGIMS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE  1080
RVFPPLDFTQ QPPAQELIAR DIHDIEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS  1140
VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR  1200
ASPSEFVIPL SKYIKAVFHT RISVGMRFRM LFETEESSVR RYMGTITEVS DADPVRWPSS  1260
YWRSVKVGWD ESTAGERPPR VSLWEIEPLT TFPMYPSLFP LRVKHPWYSG VASLHDDSNA  1320
LMWLRGVAGE GGFQSLNFQS PGIGSWGQQR LHPSLLSSDH DQYQAVVAAA AASQSGGYLK  1380
QQFLHLQQPM QSPQEHCNLN PLLQQQILQQ ASQQQIINPD AQNIQTMLSP SAIQQQLQQL  1440
QQMQQVQNDQ KQKIQPDQSY QVPTSAVLPS PTSLPSHLRE KFGFSDPNAN SSSFITSSSS  1500
DNMLDSSFLQ GSSKAVDLSR FNQPVASEQQ QQQQAWKQKF MGSQSVSFGG SVLHNSPTSK  1560
DGSVENKIGR DVQNQSLFSP QVDSSSLLYN MVPNLTSNVS DGNLSTIPSG STYLQNAMYG  1620
CLDDSSGLLQ NTGENDPATR TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL  1680
DDPDRSGWQL VFVDRENDVL LLGDDPWESF VNSVWYIKIL SPEDVHKMGK QGNDPRYLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-15346128744388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714550.0AK071455.1 Oryza sativa Japonica Group cDNA clone:J023093B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636872.10.0auxin response factor 12 isoform X1
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A0E0DJY70.0A0A0E0DJY7_9ORYZ; Auxin response factor
STRINGOMERI04G24270.50.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6