PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI04G24630.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 1701aa MW: 188833 Da PI: 6.1 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.1 | 2.9e-22 | 183 | 284 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ OMERI04G24630.3 183 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 272 99***********************9*****86555544..8************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ OMERI04G24630.3 273 EKNQLLLGIRRA 284 99999****997 PP | |||||||
2 | B3 | 70.1 | 2.9e-22 | 1019 | 1120 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F OMERI04G24630.3 1019 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 1106 99***********************9*****86555544..8************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ OMERI04G24630.3 1107 WNEKNQLLLGIRRA 1120 8899999****997 PP | |||||||
3 | Auxin_resp | 111.3 | 9.3e-37 | 309 | 392 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k OMERI04G24630.3 309 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 392 79*******************************986599******************************************985 PP | |||||||
4 | Auxin_resp | 111.3 | 9.3e-37 | 1145 | 1228 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k OMERI04G24630.3 1145 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 1228 79*******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-47 | 168 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-41 | 175 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.93E-20 | 182 | 283 | No hit | No description |
Pfam | PF02362 | 2.0E-20 | 183 | 284 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.224 | 183 | 285 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-23 | 183 | 285 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.9E-32 | 309 | 392 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 5.4E-6 | 762 | 837 | No hit | No description |
PROSITE profile | PS51745 | 21.572 | 766 | 854 | IPR000270 | PB1 domain |
SuperFamily | SSF101936 | 2.22E-47 | 1004 | 1148 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-41 | 1011 | 1134 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.93E-20 | 1018 | 1119 | No hit | No description |
Pfam | PF02362 | 2.0E-20 | 1019 | 1120 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.224 | 1019 | 1121 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-23 | 1019 | 1121 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.9E-32 | 1145 | 1228 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.0E-7 | 1595 | 1686 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.63E-7 | 1598 | 1677 | No hit | No description |
PROSITE profile | PS51745 | 24.037 | 1602 | 1686 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1701 aa Download sequence Send to blast |
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEEKKCL NSELWHACAG 60 PLVCLPTVGT RVVYFPQGHS EQVAASTNKE VEGHIPNYPN LPAQLICQLH DVTMHADVET 120 DEVYAQMTLQ PLNPVRRLGF LHDVCSAELL MVWRSEIFYA QEQNDAYLPA EMGIMSKQPT 180 NYFCKTLTAS DTSTHGGFSV PRRAAERVFP PLDFTQQPPA QELIARDIHD IEWKFRHIFR 240 GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRASRPQTV MPSSVLSSDS 300 MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLSKYI KAVFHTRISV GMRFRMLFET 360 EESSVRRYMG TITEVSDADP VRWPSSYWRS VKVGWDESTA GERPPRVSLW EIEPLTTFPM 420 YPSLFPLRVK HPWYSGVASL HDDSNALMWL RGVAGEGGFQ SLNFQSPGIG SWGQQRLHPS 480 LLSSDHDQYQ AVVAAAAASQ SGGYLKQQFL HLQQPMQSPQ EHCNLNPLLQ QQILQQASQQ 540 QIINPDAQNI QTMLSPSAIQ QQLQQLQQMQ QVQNDQKQKI QPDQSYQVPT SAVLPSPTSL 600 PSHLREKFGF SDPNANSSSF ITSSSSDNML DSSFLQGSSK AVDLSRFNQP VASEQQQQQQ 660 AWKQKFMGSQ SVSFGGSVLH NSPTSKDGSV ENKIGRDVQN QSLFSPQVDS SSLLYNMVPN 720 LTSNVSDGNL STIPSGSTYL QNAMYGCLDD SSGLLQNTGE NDPATRTFVK VYKSGSVGRS 780 LDITRFSNYA ELREELGQMF GIKGQLDDPD RSGWQLVFVD RENDVLLLGD DPWELRVCAS 840 LVWSEEEEMS SSSAASIGPP QPPPPPAPPE EGGWLGLFPP LRFAVHFVSL LVWLMTRSAS 900 AAAAAAAEKK CLNSELWHAC AGPLVCLPTV GTRVVYFPQG HSEQVAASTN KEVEGHIPNY 960 PNLPAQLICQ LHDVTMHADV ETDEVYAQMT LQPLNPQEQN DAYLPAEMGI MSKQPTNYFC 1020 KTLTASDTST HGGFSVPRRA AERVFPPLDF TQQPPAQELI ARDIHDIEWK FRHIFRGQPK 1080 RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA SRPQTVMPSS VLSSDSMHIG 1140 LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLSKYIKAVF HTRISVGMRF RMLFETEESS 1200 VRRYMGTITE VSDADPVRWP SSYWRSVKVG WDESTAGERP PRVSLWEIEP LTTFPMYPSL 1260 FPLRVKHPWY SGVASLHDDS NALMWLRGVA GEGGFQSLNF QSPGIGSWGQ QRLHPSLLSS 1320 DHDQYQAVVA AAAASQSGGY LKQQFLHLQQ PMQSPQEHCN LNPLLQQQIL QQASQQQIIN 1380 PDAQNIQTML SPSAIQQQLQ QLQQMQQVQN DQKQKIQPDQ SYQVPTSAVL PSPTSLPSHL 1440 REKFGFSDPN ANSSSFITSS SSDNMLDSSF LQGSSKAVDL SRFNQPVASE QQQQQQAWKQ 1500 KFMGSQSVSF GGSVLHNSPT SKDGSVENKI GRDVQNQSLF SPQVDSSSLL YNMVPNLTSN 1560 VSDGNLSTIP SGSTYLQNAM YGCLDDSSGL LQNTGENDPA TRTFVKVYKS GSVGRSLDIT 1620 RFSNYAELRE ELGQMFGIKG QLDDPDRSGW QLVFVDREND VLLLGDDPWE SFVNSVWYIK 1680 ILSPEDVHKM GKQGNDPRYL S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-153 | 46 | 1249 | 44 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB071298 | 0.0 | AB071298.1 Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636872.1 | 0.0 | auxin response factor 12 isoform X1 | ||||
Swissprot | Q0J951 | 0.0 | ARFL_ORYSJ; Auxin response factor 12 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | A0A0E0DJY5 | 0.0 | A0A0E0DJY5_9ORYZ; Auxin response factor | ||||
STRING | OMERI04G24270.5 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|