PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G21930.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 464aa    MW: 48946.8 Da    PI: 8.2937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G21930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.6e-053233601254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +++eYIk L
  OMERI04G21930.1 323 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 360
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-8321369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-11321374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-5321364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGDHQMMHAA PAAMYNGGGG TTSSHGVWWS NAVGVPAAAT CSTTTELAGY TAWSSALAAG  60
YDGMVADNGG KQAKNTTTAS SESPGNNSSV TFQEPASIPD PAAVPQPGLA GFTDWTQPFM  120
NNGAGLHEFL QDGHHDMSAS SLMNHSSNNL AVQQAGHHHE LLSSFGSDLL LSPTSPYGGF  180
QSSLLRSLME PTAKQQQQQP ALAGLQQYHQ YQQQMGHTPA AAAKFTQVVG ARDSLQFTND  240
APFWNPSAGF GMPAAAAVAA QDQDSVRSAK RSSPAPPRAA ATLALKTAME GVGDSSSVIT  300
KKETAFKKPR LETPSPLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL HETIEYIKFL  360
HDQVGALSAP YLKNGAHQVP HLKNSSPDKS KHGEISLKGR GLCLVPISST FAVASEVPVE  420
LWTPFGANFI SSLSPSPLQL ALLTHTPSKQ ALTLSRALST TRRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0693660.0AK069366.1 Oryza sativa Japonica Group cDNA clone:J023012B21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633969.10.0transcription factor bHLH112
TrEMBLA0A0E0DIS10.0A0A0E0DIS1_9ORYZ; Uncharacterized protein
STRINGONIVA03G13290.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-47bHLH family protein