PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G21180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 310aa MW: 33711.8 Da PI: 7.1262 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.2 | 5.4e-52 | 11 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.v.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+deelvv+yL +k++g e+ v + +vd++k+ePw+Lp +++ + +ewyfFs +d+kyatg+r+nrat+sgyWkatgkd+++ OMERI04G21180.1 11 LPPGFRFHPRDEELVVDYLYQKLSGGGGEFYGgVaMVDVDLNKCEPWELPDAARVGATEWYFFSLHDRKYATGQRTNRATRSGYWKATGKDRAI 104 79***********************99555432349999***********8888899************************************* PP NAM 93 lsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+ OMERI04G21180.1 105 VTRrraaageavaGGEVVGMRKTLVFYQGRAPRGTKTEWVMHEFRV 150 **977777777776777***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.8E-57 | 3 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.687 | 11 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-26 | 12 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MSLISMMEAN LPPGFRFHPR DEELVVDYLY QKLSGGGGEF YGGVAMVDVD LNKCEPWELP 60 DAARVGATEW YFFSLHDRKY ATGQRTNRAT RSGYWKATGK DRAIVTRRRA AAGEAVAGGE 120 VVGMRKTLVF YQGRAPRGTK TEWVMHEFRV DGHAVADHPS SSTSSSSSNL LKEDWVLCRV 180 LYKSRTATPR PVVSGEVAMS LSGELSLPPP PPPPPLPVAP AVVDGYTGGG YYEQDSSAGY 240 HHHHHRPPPP AALPFKDLTD FRDLLSNMVQ GGGGGAAAAA KTEGFHLGWS EESSGYVQQS 300 AMASQAWNPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-46 | 6 | 187 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-46 | 6 | 187 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-46 | 6 | 187 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-46 | 6 | 187 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-46 | 6 | 187 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 6e-46 | 6 | 187 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 6e-46 | 6 | 187 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 6e-46 | 6 | 187 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 6e-46 | 6 | 187 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 6e-46 | 6 | 187 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 6e-46 | 6 | 187 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 6e-46 | 6 | 187 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 5e-46 | 6 | 187 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 5e-46 | 6 | 187 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837668 | 0.0 | CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633392.1 | 1e-165 | NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0E0DIG8 | 0.0 | A0A0E0DIG8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI04G20560.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 5e-68 | NAC family protein |