PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G21180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 310aa    MW: 33711.8 Da    PI: 7.1262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G21180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.4e-52111501128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.v.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhP+deelvv+yL +k++g   e+   v + +vd++k+ePw+Lp +++ + +ewyfFs +d+kyatg+r+nrat+sgyWkatgkd+++
  OMERI04G21180.1  11 LPPGFRFHPRDEELVVDYLYQKLSGGGGEFYGgVaMVDVDLNKCEPWELPDAARVGATEWYFFSLHDRKYATGQRTNRATRSGYWKATGKDRAI 104
                      79***********************99555432349999***********8888899************************************* PP

              NAM  93 lsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++          +ge+vg++ktLvfy+grap+g+kt+Wvmhe+r+
  OMERI04G21180.1 105 VTRrraaageavaGGEVVGMRKTLVFYQGRAPRGTKTEWVMHEFRV 150
                      **977777777776777***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-573183IPR003441NAC domain
PROSITE profilePS5100554.68711183IPR003441NAC domain
PfamPF023651.9E-2612150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSLISMMEAN LPPGFRFHPR DEELVVDYLY QKLSGGGGEF YGGVAMVDVD LNKCEPWELP  60
DAARVGATEW YFFSLHDRKY ATGQRTNRAT RSGYWKATGK DRAIVTRRRA AAGEAVAGGE  120
VVGMRKTLVF YQGRAPRGTK TEWVMHEFRV DGHAVADHPS SSTSSSSSNL LKEDWVLCRV  180
LYKSRTATPR PVVSGEVAMS LSGELSLPPP PPPPPLPVAP AVVDGYTGGG YYEQDSSAGY  240
HHHHHRPPPP AALPFKDLTD FRDLLSNMVQ GGGGGAAAAA KTEGFHLGWS EESSGYVQQS  300
AMASQAWNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-46618712169NO APICAL MERISTEM PROTEIN
1ut4_B5e-46618712169NO APICAL MERISTEM PROTEIN
1ut7_A5e-46618712169NO APICAL MERISTEM PROTEIN
1ut7_B5e-46618712169NO APICAL MERISTEM PROTEIN
3swm_A6e-46618715172NAC domain-containing protein 19
3swm_B6e-46618715172NAC domain-containing protein 19
3swm_C6e-46618715172NAC domain-containing protein 19
3swm_D6e-46618715172NAC domain-containing protein 19
3swp_A6e-46618715172NAC domain-containing protein 19
3swp_B6e-46618715172NAC domain-containing protein 19
3swp_C6e-46618715172NAC domain-containing protein 19
3swp_D6e-46618715172NAC domain-containing protein 19
4dul_A5e-46618712169NAC domain-containing protein 19
4dul_B5e-46618712169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376680.0CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633392.11e-165NAC domain-containing protein 21/22
TrEMBLA0A0E0DIG80.0A0A0E0DIG8_9ORYZ; Uncharacterized protein
STRINGOMERI04G20560.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.15e-68NAC family protein