PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G19240.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 472aa    MW: 52177.9 Da    PI: 5.9994
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G19240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.9e-1359110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 
                      r +WT++E++l+++a +++G   W++I  ++        ++t+ q++s+ qk+
  OMERI04G19240.1  59 REKWTEDEHKLFLEALQLHGRA-WRRIQGYLAllaehiGTKTAVQIRSHAQKF 110
                      789*****************88.9999888888888888************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-1453113IPR009057Homeodomain-like
PROSITE profilePS5129416.87654115IPR017930Myb domain
TIGRFAMsTIGR015572.7E-1357113IPR006447Myb domain, plants
SMARTSM007178.9E-1058113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-759109IPR009057Homeodomain-like
PfamPF002491.0E-1059109IPR001005SANT/Myb domain
CDDcd001671.39E-861111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MARFQETKAR NDQGPVADHV GHQNLMENLT DPLDSSGMDM MDEARIPKAR KPYTITKQRE  60
KWTEDEHKLF LEALQLHGRA WRRIQGYLAL LAEHIGTKTA VQIRSHAQKF FSKVIKESSG  120
DNCNSLGAAP SIQIPPPRPK RKPVHPYPRK LGSTANKNVP ALKQLEKPQL QMQSLYDQDN  180
GSPTSVFTVP QIQADTLGSE SGGSPTSTID IEERCPTPSI ATAELAVELP PTNDEEVKGN  240
GDHEEVTCDR SGVPVLRLFG KRVMVNDLHQ MSAPDAGNLQ TVADMEVDAS AETPTSGTGK  300
FSSHGAAEAN TWNPWLTNTQ QFLYYLPNGQ FFSVHSALPC FTYHNEGVTC TQFSNPQVVA  360
SDQQHQHQTS EAVDYKGIQR EGSWTESNTS SSSVPETATH NSDTTESYRN GNRNRNEDEM  420
VPSPDSRKCV SPGSNCRRGF VPYKRCVADS EVLLKSQAPQ EEADGEMTRL CL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012090.0AK101209.1 Oryza sativa Japonica Group cDNA clone:J033031A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636284.10.0uncharacterized protein LOC4336779
TrEMBLA0A0E0DHN10.0A0A0E0DHN1_9ORYZ; Uncharacterized protein
STRINGOMERI04G18530.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-31MYB_related family protein