PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G17440.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 546aa    MW: 56987.2 Da    PI: 6.1346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G17440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-05114131219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F++++++  H
  OMERI04G17440.1 114 VCKNCGKEFTSWEHFLEH 131
                      7**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-62547No hitNo description
SMARTSM003550.962547IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5362547IPR007087Zinc finger, C2H2
PfamPF139120.00192647IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-6108132No hitNo description
SMARTSM00355140113133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141113140IPR007087Zinc finger, C2H2
SuperFamilySSF576677.33E-8266289No hitNo description
PfamPF139123.0E-9267291IPR007087Zinc finger, C2H2
SMARTSM003550.13267289IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242267294IPR007087Zinc finger, C2H2
PROSITE patternPS000280269289IPR007087Zinc finger, C2H2
SuperFamilySSF576677.33E-8366393No hitNo description
PfamPF139124.6E-11371394IPR007087Zinc finger, C2H2
SMARTSM003553.7371393IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182371393IPR007087Zinc finger, C2H2
PROSITE patternPS000280373393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MHMQPSPSSP RAPPPTAAQA SGYKHFCRVC NKGFTCGSAL GGHMRAHDVG DGDGLGADDD  60
DDDDDDSLGD EAVRRARGGA DDPWNAGGPS SSGAATHVYA LRTNPNRVTR SRQVCKNCGK  120
EFTSWEHFLE HGKCSSGEDD VDRSLQPWSP SPEADGEEDP APTAGCLKGK RSRRCKGTGV  180
DLSPTPSACA AGEEEDLANC LVMLSSSKVD QTGVTEAEQP SSSSASKGHK RLITFMEPTT  240
YALDTVMALP PPAPAPQYVS TVPRGMFECK ACKKVFSSHQ ALGGHRASHK KVKGCFAAKL  300
ESNAAEVADR NEDNPGKATS DARRNVHASM DGDVNAGTSD AVAELSMAIV PIEPPVAALA  360
AAPLKKKGKM HECSVCHRLF TSGQALGGHK RCHWLTSSSA DHTASVPPLA DDLVPLSFRP  420
MLDAPEPALD LSIAANPPLL ASAATVRPKV GGSSFHLDAP PPVYIPSSPA IPSQRNKATA  480
TTGSQNANDA VGLSTAAAED EADSTTVKRA RLSDLKDVSM AGETTPWLQV GIGSSSRGGG  540
DDNDKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363369LKKKGKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634601.10.0uncharacterized protein LOC4336604
TrEMBLA0A0E0DGU50.0A0A0E0DGU5_9ORYZ; Uncharacterized protein
STRINGOMERI04G16720.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.19e-20C2H2-like zinc finger protein