PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G17260.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 282aa    MW: 29358.1 Da    PI: 5.381
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G17260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19115165155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  OMERI04G17260.1 115 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 165
                      57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.72E-32115175No hitNo description
PfamPF008471.6E-13115165IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22116175IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-33116175IPR001471AP2/ERF domain
SMARTSM003801.0E-38116179IPR001471AP2/ERF domain
PROSITE profilePS5103224.289116173IPR001471AP2/ERF domain
PRINTSPR003676.5E-11117128IPR001471AP2/ERF domain
PRINTSPR003676.5E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEADASHTPT TSSSVSVSFS SSSLSTSSST SSLVDNGAQD RPKSSKPKHA AKKRKRAAAE  60
EPANAAHGAG EDTSSCSTDD NAAASGKAQA GGGGGVDSSS TCTAASAPRS GFKHPSYRGV  120
RRRSWGKWVS EIREPRKKSR IWLGTFPTAE MAARAHDVAA LAIKGRNAHL NFPDSAHELP  180
RPASTSPADI QAAAAKAAAE VRCEEESSPS SPATAEQPEE AACPDTVHAD GGQDNALFDL  240
PDLLLDLRDG LWWSPVWPAA LAAEEYDGGD AVVLNEPLLW AE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-18111173972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654PKHAAKKRK
25056AKKRKRA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5761430.0KM576143.1 Oryza sativa Indica Group cultivar HRC300 dehydration responsive element binding protein 4-2 (DREB4-2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635762.11e-125ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ76e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9ZQP34e-47ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A0E0DGS60.0A0A0E0DGS6_9ORYZ; Uncharacterized protein
STRINGOMERI04G16530.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]