PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G17240.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 342aa    MW: 37107.9 Da    PI: 7.5402
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G17240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.8e-113075146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ v+ +G+ +W++I ++  + Rt+k+c++rw +
  OMERI04G17240.1 30 KGPWMAEEDEVLLEHVRTHGPMDWSSIRSKGLLPRTGKSCRLRWVN 75
                     79******************99*****8876677**********87 PP
2Myb_DNA-binding43.38.7e-1486126345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++T+eE+   +++ +q+G++ W++Ia +++ gRt++++k++w 
  OMERI04G17240.1  86 KFTAEEERVVIELQAQFGNK-WARIATYLQ-GRTDNDVKNFWS 126
                      79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3572577IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-192778IPR009057Homeodomain-like
SuperFamilySSF466895.86E-2628125IPR009057Homeodomain-like
SMARTSM007176.6E-92979IPR001005SANT/Myb domain
CDDcd001673.92E-103277No hitNo description
PfamPF139211.8E-103382No hitNo description
PROSITE profilePS5129420.31978133IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-1879131IPR009057Homeodomain-like
SMARTSM007179.7E-1283131IPR001005SANT/Myb domain
PfamPF002495.3E-1286126IPR001005SANT/Myb domain
CDDcd001672.86E-1086125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MARAPGGVRR RSGRRGAGGG GGGGGEALRK GPWMAEEDEV LLEHVRTHGP MDWSSIRSKG  60
LLPRTGKSCR LRWVNKLRPN LKSGCKFTAE EERVVIELQA QFGNKWARIA TYLQGRTDND  120
VKNFWSTRQK RLARLLRGPL PAARPNKHNS GKGKAPSSSS LDSQTATFHQ SSGSLDQASL  180
EGNSLGWQCR EAAPFMGYDQ ACSGFFAFEG PLPLQLLPPA DGEASSSNAA QSAPPPLLFD  240
QPPYPLINFP GWPERYVDVG HGFVDAGAMD GLAYQELLPM VQSVPTIMPF FGMECAHDAV  300
KHEPFDDLPP NMFDDAVDQP PPPPPPPPPP SPSPSPSRDD LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-252813125126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8552180.0CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634881.20.0probable transcription factor MYB58
SwissprotQ0JB890.0MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A0E0DGS30.0A0A0E0DGS3_9ORYZ; Uncharacterized protein
STRINGOMERI04G16510.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.15e-57MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]