PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G15770.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 700aa    MW: 75687.2 Da    PI: 6.5117
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G15770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.3e-24126227199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++       ++++ +   +  +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+  ++
  OMERI04G15770.1 126 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysSEPPVQ--SVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFM--RD 215
                      89*********************999****987656666..5************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++ +v+++r+
  OMERI04G15770.1 216 EGGNIHVGLRRA 227
                      99*******996 PP
2Auxin_resp116.32.6e-38281364183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa++a+++++Fev+Y+Prast+eF+v+++ v++a+ v++++GmRfkmafetedss++++ +Gtv+gv+++d+vrWp+S+Wr+L+
  OMERI04G15770.1 281 AATRATSGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQASDSVRWPQSPWRLLQ 364
                      68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-37115229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-28121228IPR015300DNA-binding pseudobarrel domain
CDDcd100172.95E-19125226No hitNo description
PROSITE profilePS5086312.435126228IPR003340B3 DNA binding domain
PfamPF023625.6E-22126227IPR003340B3 DNA binding domain
SMARTSM010193.9E-21126228IPR003340B3 DNA binding domain
PfamPF065076.9E-33281364IPR010525Auxin response factor
PROSITE profilePS5174519.107614694IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MLTFMELAGP TEGDGGGSVD SQLWAACAGS MSSVPPVGAA VYYFPQGHAE QASAAVDLSS  60
ARVPPLVPCR VVAVRFMADA ESDEVFAKIR LVPLRPGDAV VDVGEAAAAE ARREEENSSR  120
PRPTSFAKTL TQSDANNGGG FSVPRFCAET IFPELDYSSE PPVQSVCAKD VHGVEWTFRH  180
IYRGTPRRHL LTTGWSPFVN KKQLTAGDSI VFMRDEGGNI HVGLRRAKRG FCSIGGDDES  240
LSSMPGWDQY RGLMRRNATA TATGGRTPPK GKVPPENVLT AATRATSGQP FEVLYYPRAS  300
TPEFCVRAAA VRTAMAVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQAS DSVRWPQSPW  360
RLLQVTWDEP ELLQNVKRVC PWLVELVSSM PNLHLPSFSP PRKKPRNPPY AELPLEGQIF  420
TGPVFPPNPM AHDHHHHHGF PFLPFPDSSA QPAGIQGARH AQFASPFPEF HIGNLQPNLM  480
LYAGIRLPPA DRAAPAPRPP RIIISTDLTI GSPGKPDDAA CSPSSGGKKI DDTKPGGFLL  540
FGQAILTEEQ IKNGNSDGRP ASPNWDAEKA PNASEGSDSG VTQGSPTKNT TPSWSLPYFG  600
GNNISRASEY ELNPGQCKVF VESEAVGRSL DLSALSSFEE LYACLSDMFS IGSDELRSHL  660
VYRSPAGEVK HAGDEPFCAF VKSARKLRIL TDVGSDNLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-80138533388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629580.0AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence.
GenBankAL7316290.0AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633845.10.0auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A0E0DG710.0A0A0E0DG71_9ORYZ; Auxin response factor
STRINGOMERI04G15090.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10