PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G15260.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 340aa MW: 38467.3 Da PI: 8.4624

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G15260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	26.4	1.9e-08	16	129	7	126
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 F+P e++v++yL + + + l + ++++d+y ++P L +a+e+ ew+fF++r++ g ++r + g + + + ++ + OMERI04G15260.1 16 FDPMAEDIVNRYLPLRRALRCDALPRQVHDADVYGAHPALLAsVYPAANERfEWFFFVCRRRCP-GG--RRR-AGPGDYRLSQEARH------R 99 9*********977766666556567**********83333344457****998854.33..233.34455554444332......2 PP NAM 99 lvglkktLvfykgrapkg..ektdWvmhey 126 +++ +y+ ++ g ++t+W m ey OMERI04G15260.1 100 GNAFCHSFRYYEYEDAGGgfRETEWRMVEY 129 235667888886655544235899999888 PP
2	NAM	22.3	3.7e-07	182	305	13	128
NAM 13 elvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeek.ewyfFskrdkkyatgk......rknratksgyWkatgkdkevlskkge 98 lv++yL+ g++l + +v + d+++++P + + +a+++ ew f + r + +a+g+ r++ + g + + v ++ OMERI04G15260.1 182 VLVQFYLASLRLGNPLAC-RVHRADDVFDAHPAVITAvLPAANDRcEWLFAAVRPRGHAQGHgdgappRPR-KSGPGAYVPVRECRVVDG-RRG 272 5999*********999.666677******85222334446999999999877667664443.456788888877666665.888 PP NAM 99 lvglkktLvfy...kgrapkgektdWvmheyrl 128 ++g++ ++ + ++ ++ +++t+W m+eyr+ OMERI04G15260.1 273 DMGCRLVFWYReedEEARRVSRRTEWWMDEYRF 305 99998888443233444579*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.771	10	152	IPR003441	NAC domain
SuperFamily	SSF101941	7.98E-20	15	150	IPR003441	NAC domain
Pfam	PF02365	7.7E-6	16	129	IPR003441	NAC domain
PROSITE profile	PS51005	13.457	170	334	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-20	181	332	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MARAVASGGG GGNQPFDPMA EDIVNRYLPL RRALRCDALP RQVHDADVYG AHPALLASVY 60 PAANERFEWF FFVCRRRCPG GRRRAGPGDY RLSQEARHRG NAFCHSFRYY EYEDAGGGFR 120 ETEWRMVEYG DRGRDAGGSE GFELVVCKVY PARGGALHER LGADRAALAL RHRADEDAKP 180 QVLVQFYLAS LRLGNPLACR VHRADDVFDA HPAVITAVLP AANDRCEWLF AAVRPRGHAQ 240 GHGDGAPPRP RKSGPGAYVP VRECRVVDGR RGDMGCRLVF WYREEDEEAR RVSRRTEWWM 300 DEYRFGPDFP YGELPAPMAR GEDEELVVYK LYPRLVGNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL662969	0.0	AL662969.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CR855213	0.0	CR855213.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101P20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634867.1	0.0	uncharacterized protein LOC9267434
TrEMBL	A0A0E0DFZ2	0.0	A0A0E0DFZ2_9ORYZ; Uncharacterized protein
STRING	OMERI04G14570.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14767	18	19