PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G14630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 930aa    MW: 100895 Da    PI: 6.3339
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G14630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.18.4e-29558609152
           RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCR++GI+RWP+Rki+++
  OMERI04G14630.1 558 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRWPSRKINKV 609
                      589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.847544629IPR003035RWP-RK domain
PfamPF020426.8E-26561609IPR003035RWP-RK domain
SuperFamilySSF542778.5E-25819911No hitNo description
Gene3DG3DSA:3.10.20.2401.2E-22825907No hitNo description
PROSITE profilePS5174526.738828910IPR000270PB1 domain
SMARTSM006664.4E-22828910IPR000270PB1 domain
PfamPF005642.2E-17829909IPR000270PB1 domain
CDDcd064071.05E-29829909No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MDMPTPSNRA GCNGNTGGTM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR  60
MFAMWPSMGS SPCAVGMSED MPLNAYSGLG GAVEEPSQIM PVNPTEAEKM GKSSGELGSD  120
DGAHQGSSMV PRSVVGSSLA DRMLMALSLF RESLGSGALA QVWMPVEQEG HVVLSTCEQP  180
FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH  240
ALHHEIRGSL AMPIYDPSKD SCCAVFELVT RKEKPDFSAE MDSAVNLKAT KGSSNQKFYT  300
ENQKFAFTEI LDVLRAICHA HMLPLALTWV RTSNGIDGGY VVGKDGASFS QSGKTILRIH  360
ESACYVNDGK MQGFLQACAR RHLEKGQGIA GRALKSNLPF FSPDIREYSI EDYPLAHHAR  420
KFSLHAAVAI RLRSTYTGND DYILEFFLPV SCKGSGEQQM LLNNLSSTMQ RICKSLRTVY  480
EAEVDNVNAG TAAVFRKNNE SCLPTGHTES SSHGDQSTTG ASFKDTSLAN KPGVMEPELA  540
EQVQSSSIGH AEKKRGTAEK NISLDVLRKY FSGSLKDAAK SLGVCPTTLK RICRHHGISR  600
WPSRKINKVN RSLKKIQTVI NSVHGVDRSL QYDPATGSLV PVVSLPEKLT FPSCDDLPTS  660
SVGKTVEENS DPKSEEGCSL PDGSQRKSCQ LQISDVKKSN EDEFHIGSGN SDFYGANATA  720
KSNSEVTQGP LCPTGAFSAL HLKGTDCTNP SSSLRPSSES TRDQIVGRNS PSIQQEDLDM  780
LDNHEAKDKD HMHPSTSGMT DSSSGSASSH PTFKQNTGSA LKDAASPALT VKATYNGDTV  840
RFKFLPSMGW YHLLEEIAKR FKLPTGAFQL KYKDDEDEWV ILANDSDLQE CVDVLDSIGS  900
RIVKLQVRDL PCIVSSSGSS TCLQLAAHSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0607530.0AK060753.1 Oryza sativa Japonica Group cDNA clone:001-032-G10, full insert sequence.
GenBankAK1031540.0AK103154.1 Oryza sativa Japonica Group cDNA clone:J033120P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636521.10.0protein NLP2
RefseqXP_015636522.10.0protein NLP2
RefseqXP_015636523.10.0protein NLP2
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLA0A0E0DFP20.0A0A0E0DFP2_9ORYZ; Uncharacterized protein
STRINGORUFI04G18750.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-177Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]