PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G14630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 930aa MW: 100895 Da PI: 6.3339 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.1 | 8.4e-29 | 558 | 609 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCR++GI+RWP+Rki+++ OMERI04G14630.1 558 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRWPSRKINKV 609 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.847 | 544 | 629 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.8E-26 | 561 | 609 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 8.5E-25 | 819 | 911 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.2E-22 | 825 | 907 | No hit | No description |
PROSITE profile | PS51745 | 26.738 | 828 | 910 | IPR000270 | PB1 domain |
SMART | SM00666 | 4.4E-22 | 828 | 910 | IPR000270 | PB1 domain |
Pfam | PF00564 | 2.2E-17 | 829 | 909 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.05E-29 | 829 | 909 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 930 aa Download sequence Send to blast |
MDMPTPSNRA GCNGNTGGTM GPSDDPYGAA AMNLDCYSEI YSPSVADQLF SLLNDPAAHR 60 MFAMWPSMGS SPCAVGMSED MPLNAYSGLG GAVEEPSQIM PVNPTEAEKM GKSSGELGSD 120 DGAHQGSSMV PRSVVGSSLA DRMLMALSLF RESLGSGALA QVWMPVEQEG HVVLSTCEQP 180 FLLDQVLAGY REVSRHFVFS AKEEPGLQPG LPGRVFISGV PEWTSSVLYY NRPEYLRMEH 240 ALHHEIRGSL AMPIYDPSKD SCCAVFELVT RKEKPDFSAE MDSAVNLKAT KGSSNQKFYT 300 ENQKFAFTEI LDVLRAICHA HMLPLALTWV RTSNGIDGGY VVGKDGASFS QSGKTILRIH 360 ESACYVNDGK MQGFLQACAR RHLEKGQGIA GRALKSNLPF FSPDIREYSI EDYPLAHHAR 420 KFSLHAAVAI RLRSTYTGND DYILEFFLPV SCKGSGEQQM LLNNLSSTMQ RICKSLRTVY 480 EAEVDNVNAG TAAVFRKNNE SCLPTGHTES SSHGDQSTTG ASFKDTSLAN KPGVMEPELA 540 EQVQSSSIGH AEKKRGTAEK NISLDVLRKY FSGSLKDAAK SLGVCPTTLK RICRHHGISR 600 WPSRKINKVN RSLKKIQTVI NSVHGVDRSL QYDPATGSLV PVVSLPEKLT FPSCDDLPTS 660 SVGKTVEENS DPKSEEGCSL PDGSQRKSCQ LQISDVKKSN EDEFHIGSGN SDFYGANATA 720 KSNSEVTQGP LCPTGAFSAL HLKGTDCTNP SSSLRPSSES TRDQIVGRNS PSIQQEDLDM 780 LDNHEAKDKD HMHPSTSGMT DSSSGSASSH PTFKQNTGSA LKDAASPALT VKATYNGDTV 840 RFKFLPSMGW YHLLEEIAKR FKLPTGAFQL KYKDDEDEWV ILANDSDLQE CVDVLDSIGS 900 RIVKLQVRDL PCIVSSSGSS TCLQLAAHSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060753 | 0.0 | AK060753.1 Oryza sativa Japonica Group cDNA clone:001-032-G10, full insert sequence. | |||
GenBank | AK103154 | 0.0 | AK103154.1 Oryza sativa Japonica Group cDNA clone:J033120P08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636521.1 | 0.0 | protein NLP2 | ||||
Refseq | XP_015636522.1 | 0.0 | protein NLP2 | ||||
Refseq | XP_015636523.1 | 0.0 | protein NLP2 | ||||
Swissprot | Q0JC27 | 0.0 | NLP2_ORYSJ; Protein NLP2 | ||||
TrEMBL | A0A0E0DFP2 | 0.0 | A0A0E0DFP2_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI04G18750.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 1e-177 | Nin-like family protein |
Publications ? help Back to Top | |||
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