PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G14260.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 368aa    MW: 39111 Da    PI: 8.6529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G14260.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11296341655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l+P+     +k  s +++L +Av++Ik Lq
  OMERI04G14260.2 296 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 341
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15293356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-12294345No hitNo description
Gene3DG3DSA:4.10.280.107.8E-14295355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNPAPSRAPQ RQQRGGEMSA RYGGGLQFFA DAPPAGVEGG AATARTFFPV PGGGGEQQPP  60
ERAIRQQHYS GGSGAAEISL GHGHGGQHHF HQFGVEAKDG GGGGGGDQSG FLTRHNSSPP  120
GFFSSPVMDN GFSSSARPAG SSLGEVRHGA MSSSSNNNKK MKAPLSFASS RQGSGGLSQI  180
SEDGIPDLTD SIHGAAHHHV RSEENVSTHD HVVRSFSSGG FSIGSWEDSN SIVFSTSTGK  240
SGAHGNDDII ATLSNYESQL VAPREMAGVE KYLQMQHDQV PFRVRAKRGC ATHPRSIAER  300
ERRTRISEKL RKLQALVPNM DKQTSTSDML DLAVDHIKGL QSQLQTLKED KEKCTCSCKQ  360
ASRNRPAD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680390.0AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636683.10.0transcription factor bHLH129
TrEMBLA0A0E0DFI60.0A0A0E0DFI6_9ORYZ; Uncharacterized protein
STRINGOS04T0489600-020.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-44bHLH family protein