PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI04G13990.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 812aa MW: 87650.3 Da PI: 9.7427

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI04G13990.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.5	2.7e-26	519	587	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+l+Li++rrem+++++++k++k+lWe++s++mre+gf rsp++C++kw+nl k++kk + ++++ OMERI04G13990.2 519 WVQDETLCLIALRREMDSHFNTSKSNKHLWEAISARMREQGFDRSPTMCTDKWRNLLKEFKKARSHARG 587 ***************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81383	3.79E-6	23	83	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	5.7E-4	27	71	No hit	No description
PROSITE profile	PS50090	8.293	511	575	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.7E-4	512	579	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-5	515	577	IPR001005	SANT/Myb domain
CDD	cd12203	4.03E-29	517	582	No hit	No description
Pfam	PF13837	1.3E-17	518	588	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MSSSSSPRAP GDSSTRKRRR RLASGSGPRW ASLPEDLVDL VASRLLAGGD LLDYVRFRAV 60 CTSWRSATAS PRGRGVADRR FHPRRWMMLP EGHGLYPGHP SLRGYARFLN LDTGTLVRAR 120 IPLLRDGYVV IDPVDGLLLL LLDPDRNQEG AVRLLHPFTG DTAELPPLGT VLPHLGSRLL 180 DCPAPSRIRS LARVVCASVS CSATGAGAGA ITVLLALSVV SRVAFATSLD RQWSLSTYEC 240 VTLSSPIASH GKIYLMHTDR SCGEKIHQVL RIDPPAAAKD GSGSGSGAGR ALQEPKLVAT 300 IPARKLDHFQ GLVECGSEIL VLGCKNWSTS RISVFKLADL VLQRFMPIKS IGGHTLFIGE 360 RNISVSSKIL PTVKGDNLVY LNSGLVKYHL SSGSLSLAID NCSLYGRVPG PSSLVHYIYS 420 CCIRNRWPWP GTRAGPGRTS TASSPSPPGS PLLRSPTAAT TAPVTSPIAG FPFAHGATPR 480 APPRXXXXXX SSGEDGGHDS SSRAAASGGG GPKKRAETWV QDETLCLIAL RREMDSHFNT 540 SKSNKHLWEA ISARMREQGF DRSPTMCTDK WRNLLKEFKK ARSHARGGGG VGGGGVGGGA 600 GGGNCPAKMA CYKEIDDLLK RRGKPAGGGG AAVGSGAVKS PTVTSKIDSY LQFDKGFEDA 660 SIPFGPVEGG DNQVTFGGRV ILVKWGDYTK RIGIDGTADA IKEAIKSAFG LRTRRAFWLE 720 DEDEVVRSLD RDMPVGTYTL HLDTGMTIKL YMFENDEVRT EDKTFYTEED FRDFLSRRGW 780 TLLREYSGYR IADTLDDLRP GVIYEGMRSL GD

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MSSSSSPRAP GDSSTRKRRR RLASGSGPRW ASLPEDLVDL VASRLLAGGD LLDYVRFRAV  60
CTSWRSATAS PRGRGVADRR FHPRRWMMLP EGHGLYPGHP SLRGYARFLN LDTGTLVRAR  120
IPLLRDGYVV IDPVDGLLLL LLDPDRNQEG AVRLLHPFTG DTAELPPLGT VLPHLGSRLL  180
DCPAPSRIRS LARVVCASVS CSATGAGAGA ITVLLALSVV SRVAFATSLD RQWSLSTYEC  240
VTLSSPIASH GKIYLMHTDR SCGEKIHQVL RIDPPAAAKD GSGSGSGAGR ALQEPKLVAT  300
IPARKLDHFQ GLVECGSEIL VLGCKNWSTS RISVFKLADL VLQRFMPIKS IGGHTLFIGE  360
RNISVSSKIL PTVKGDNLVY LNSGLVKYHL SSGSLSLAID NCSLYGRVPG PSSLVHYIYS  420
CCIRNRWPWP GTRAGPGRTS TASSPSPPGS PLLRSPTAAT TAPVTSPIAG FPFAHGATPR  480
APPRXXXXXX SSGEDGGHDS SSRAAASGGG GPKKRAETWV QDETLCLIAL RREMDSHFNT  540
SKSNKHLWEA ISARMREQGF DRSPTMCTDK WRNLLKEFKK ARSHARGGGG VGGGGVGGGA  600
GGGNCPAKMA CYKEIDDLLK RRGKPAGGGG AAVGSGAVKS PTVTSKIDSY LQFDKGFEDA  660
SIPFGPVEGG DNQVTFGGRV ILVKWGDYTK RIGIDGTADA IKEAIKSAFG LRTRRAFWLE  720
DEDEVVRSLD RDMPVGTYTL HLDTGMTIKL YMFENDEVRT EDKTFYTEED FRDFLSRRGW  780
TLLREYSGYR IADTLDDLRP GVIYEGMRSL GD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	5e-38	513	614	1	86	DNA binding protein GT-1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	19	RKRRR
2	16	21	KRRRRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063256	0.0	AK063256.1 Oryza sativa Japonica Group cDNA clone:001-112-H10, full insert sequence.
GenBank	AL606998	0.0	AL606998.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634649.1	0.0	uncharacterized protein LOC4336213 isoform X2
TrEMBL	A0A0E0DFE4	0.0	A0A0E0DFE4_9ORYZ; Uncharacterized protein
STRING	ONIVA04G14730.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.2	1e-105	Trihelix family protein