PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G12430.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 660aa    MW: 72907.2 Da    PI: 6.9269
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G12430.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.44.5e-39101231129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      +ppGfrFhPtdeel+ +yLkkkv  +k++l    ++ +++ + P+          +ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + +
  OMERI04G12430.3  10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL----ERSEMIGSAPQ----------NEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT 89 
                      69***********************99888....56677777775..........58************************************9 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + +++g++ktLvfy+grap+g+ktdW+mheyrle
  OMERI04G12430.3  90 -SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 123
                      .8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-445129IPR003441NAC domain
PROSITE profilePS5100539.20310138IPR003441NAC domain
PfamPF023656.3E-2711122IPR003441NAC domain
PfamPF035953.3E-10487572IPR004695Voltage-dependent anion channel
PfamPF085835.4E-14578645IPR013892Cytochrome c oxidase biogenesis protein Cmc1-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0055114Biological Processoxidation-reduction process
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE RSEMIGSAPQ NEWYFFSHKD  60
RKYPTGSRTN RATTAGFWKA TGRDKCIRTS YRKIGMRKTL VFYRGRAPHG QKTDWIMHEY  120
RLEDADDSQA ASSKCFFKIG GGGGGGEGSG GSQGGDVGGG HLAVSPPLGG GHAMAAASHY  180
MHPHHQYHHH AAVASPFYYT QMQPAAAPPP PHAAYSHHVQ VQDLLTNHRP SADAGYDFSG  240
LPAVDHHHHH PGLDVGSSDG GVAAGGADGD QAAAGAAGST EQQWQAIDGF SNGGAAAPLL  300
IEVPSQVIDG FDCVGGGGDA TATATLSEQS KELEMLGKEK DVVISIPAPV YAPRSVSMPA  360
AYEQEGAHIL YSVSLSMPAS PSGFHFSQND ETTRRCDSTR DKRFDQFKTF SGRLERQLCT  420
LCGRPAQEHM TNGEGAPEPN IAEEETEQVP GADRYFDALE GPELETLRAT ETTVQTKDEK  480
WSFLLRFPIS AFGMCLGAIL WKTLTSFLHV SPVVNHVLWW IALALTGLVF FIYLLKVVFY  540
FKVVRREFYH PIRANFFFAP WITCLFLVQG SHSTSLEMHP PLTLHRHPMC AEIIEAFQKC  600
HVDHPVKKFF GECTDLKIKL DQCFRQEKAL KRKANFEESK KFKEQLLAYK KEMAEQDKES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-361012220145NAC domain-containing protein 19
3swm_B2e-361012220145NAC domain-containing protein 19
3swm_C2e-361012220145NAC domain-containing protein 19
3swm_D2e-361012220145NAC domain-containing protein 19
3swp_A2e-361012220145NAC domain-containing protein 19
3swp_B2e-361012220145NAC domain-containing protein 19
3swp_C2e-361012220145NAC domain-containing protein 19
3swp_D2e-361012220145NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1575000.0AC157500.1 Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DER40.0A0A0E0DER4_9ORYZ; Uncharacterized protein
STRINGOMERI04G11500.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.12e-63NAC domain containing protein 70