PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G12420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 202aa MW: 23229 Da PI: 7.4365 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.6 | 9.3e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLCda++ vi+fs+ gk+ye + OMERI04G12420.1 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVFSPLGKIYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 59.4 | 1.5e-20 | 81 | 172 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s+e++ + qq++ L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le +++iRs+K++++ ++ie l++ke l+ +n L++++ OMERI04G12420.1 81 SNEQNIPQVIQQDVLLLRQEVDLLQNSLRYMYGErDISHMKLCELQSLESNLEVWVNNIRSTKMQIMSTEIEMLKNKEGILKAANDILQERI 172 4667778999***********************978****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.49E-27 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.086 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.48E-37 | 2 | 73 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-23 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.0E-23 | 81 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.913 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVFSP LGKIYELATN 60 GNMQGLIERY KSNLPEAHAE SNEQNIPQVI QQDVLLLRQE VDLLQNSLRY MYGERDISHM 120 KLCELQSLES NLEVWVNNIR STKMQIMSTE IEMLKNKEGI LKAANDILQE RIIAQTSILD 180 VGGNMMIPQV PFQLTTESNY YF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-15 | 1 | 92 | 1 | 90 | MEF2C |
5f28_B | 3e-15 | 1 | 92 | 1 | 90 | MEF2C |
5f28_C | 3e-15 | 1 | 92 | 1 | 90 | MEF2C |
5f28_D | 3e-15 | 1 | 92 | 1 | 90 | MEF2C |
6byy_A | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194477.1 | 1e-120 | MADS-box transcription factor 26-like | ||||
Refseq | XP_020194478.1 | 1e-120 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 3e-75 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 3e-75 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A0E0DER1 | 1e-147 | A0A0E0DER1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI04G11470.1 | 1e-148 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 4e-57 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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