PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G10080.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 522aa    MW: 54769.5 Da    PI: 7.8791
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G10080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.81.2e-17140229186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +Wt+  +  L++ ++++ e+l+rg+l++ +We+v++++     +    +s +qCk+k++nl+kryk + ++  +  + ++s++p+f+++e
  OMERI04G10080.1 140 EWTDGAISSLLDSYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKNSGGKSVEQCKNKIDNLKKRYKVECQRLAGSGASAVSHWPWFKKME 229
                      5*************************************6655444446899***************888887777677888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-20138231No hitNo description
Gene3DG3DSA:3.40.1160.101.9E-40284350IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.76E-32286345IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006964.2E-8289491IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.76E-32399515IPR001048Aspartate/glutamate/uridylate kinase
Gene3DG3DSA:3.40.1160.101.9E-40403491IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MASCDDDFGL LGDGPVPEEE AAAASSQAAP PPQQQQAQTF CFGDAASVAG AGAGVGPFAP  60
MGQEEGNHSV ERGKAAAAHH SKRGRDRAEE FSDGGEYCSY LNSGGGGGGA GKKGRGGGGG  120
GGGGGGAAAG SSEYRKDREE WTDGAISSLL DSYTDRFEQL NRGNLRGRDW EDVAAAVTDG  180
QGKNSGGKSV EQCKNKIDNL KKRYKVECQR LAGSGASAVS HWPWFKKMEQ IVGNSSSPAS  240
SKALVASDDD NKPRQPQQHS SKRHAPSGSS TPTFGGSSRL APPSNPKWKR VLLKIGGTAL  300
AGAPPQNVDP KVIMLIAREV QVACRHGVEV SIVVGGRNIF CGDTWVSATG TDRASTYSIG  360
HADAALVPNS PFDSCMMFCI LIFTMDIPYM YLMNTRIGSS SSSTCVSLNF VRMMASVMNA  420
VLLQASLEKI GVETRVQTAL MMQEVAEPYI RRRAIRHLEK GRVVIFAGIG AGIGNPLFTT  480
DTAAALRASE IVIFNMLEPG NISKAICGDQ VGTLVDQSGR IT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A3e-322864915154uridylate kinase
1z9d_B3e-322864915154uridylate kinase
1z9d_C3e-322864915154uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637195.10.0uncharacterized protein LOC4335753
TrEMBLA0A0E0DDN50.0A0A0E0DDN5_9ORYZ; Uncharacterized protein
STRINGOMERI04G08980.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-109Trihelix family protein