PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G09670.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 295aa    MW: 30018.5 Da    PI: 4.3061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G09670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1851102156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  OMERI04G09670.1  51 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 102
                      5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-2951110No hitNo description
SuperFamilySSF541714.71E-2152109IPR016177DNA-binding domain
SMARTSM003803.1E-3252115IPR001471AP2/ERF domain
PfamPF008471.1E-1052101IPR001471AP2/ERF domain
PROSITE profilePS5103221.56252109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2852109IPR001471AP2/ERF domain
PRINTSPR003671.7E-85364IPR001471AP2/ERF domain
PRINTSPR003671.7E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MMNFSSYFYS STAAAGGGGG GEKKSSSSSS ASKKKQQQAA AAAAEGGNNQ TRYLGVRRRP  60
WGRYAAEIRD PATKERHWLG TFDTAEEAAV AYDRAARSLR GARARTNFAY PDLPPGSSVT  120
PYLSPDLSAD ASDQLLQPFY ANPSAAAALP TPAAVMAGGG VEFGGEYMSV YGGGGVDMSS  180
LMDDIAMPDD LPPSVNGGGG GFASSDEYSS GGCGGGMVDD VSVYGGGNGG GSSWCDASDF  240
ASYSSSSPAA AAAGSHGMYF EEGYVHSPLF SPMPAVDDAG ADGFQLGGSS SSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1853108662ATERF1
3gcc_A6e-1853108662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635285.11e-133ethylene-responsive transcription factor LEP
TrEMBLA0A0E0DDG90.0A0A0E0DDG9_9ORYZ; Uncharacterized protein
STRINGOGLUM04G10880.11e-151(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-24ERF family protein