PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G07690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 167aa MW: 17517 Da PI: 10.4646 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 6.1e-14 | 57 | 108 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 g+ GV+++ grW AeIrd + k ++g+f+ta eAa a++a ++l+g OMERI04G07690.1 57 GILGVHQRT-YGRWSAEIRD----NviKGsHCLWIGTFDTALEAALAYDAVSRRLYG 108 678***999.8*********....443225********************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.173 | 57 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-11 | 57 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-7 | 58 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-14 | 58 | 116 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-18 | 60 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.29E-15 | 60 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MMNSSSTSAV ESVTNLQART PPLPNPVAPK TGGQSEQALK LASTTAAATK KRRSKHGILG 60 VHQRTYGRWS AEIRDNVIKG SHCLWIGTFD TALEAALAYD AVSRRLYGLN AKANFAAGED 120 LPPLPPPPAP VAMPYAAPPK RPKKCNTAVP PPQAVDTPAA AAGVAWS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 54 | KKRRSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR855091 | 1e-126 | CR855091.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0130K07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619473.1 | 4e-48 | ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A0E0DCR6 | 1e-117 | A0A0E0DCR6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI04G06800.1 | 6e-71 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15980 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 2e-15 | ERF family protein |