PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G06880.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 233aa    MW: 24409.5 Da    PI: 4.6111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G06880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-173685255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a++ ++g
  OMERI04G06880.1 36 RYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARTIRG 85
                     588******.**********843...4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-263594No hitNo description
Gene3DG3DSA:3.30.730.102.7E-283693IPR001471AP2/ERF domain
PfamPF008473.3E-103685IPR001471AP2/ERF domain
PROSITE profilePS5103221.2853693IPR001471AP2/ERF domain
SMARTSM003802.2E-313699IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-213693IPR016177DNA-binding domain
PRINTSPR003671.1E-83748IPR001471AP2/ERF domain
PRINTSPR003671.1E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDFYFFSSSA PAPEKKTKRR QQQREQEGGG GGNEARYLGV RRRPWGRYAA EIRDPATKER  60
HWLGTFDTAE EAAVAYDRAA RTIRGAAART NFAYPDLPPG SSLTPYLSPD LSADDLHRHY  120
YGGGAGADTQ TAAAAALPAP AQPAHGGEAQ EMACGGGGGQ NVGGVFDVGG GGAAWCDASE  180
LEFGGYDDAG ASAAAAAVYF EEGYVHSPMF SPMPAADEVA ADGFQLGGSS YYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-182992771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879251.11e-107ethylene-responsive transcription factor LEP
TrEMBLA0A0E0DCG81e-165A0A0E0DCG8_9ORYZ; Uncharacterized protein
STRINGOMERI04G06140.11e-166(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.14e-23ERF family protein