PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G04760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 340aa MW: 37362.9 Da PI: 8.1325 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl OMERI04G04760.1 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.6 | 5e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+ Ed ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ OMERI04G04760.1 69 GEFTEHEDRIICSMFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.884 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.57E-10 | 16 | 62 | No hit | No description |
SMART | SM00717 | 7.2E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.154 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.3E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FTEHEDRIIC SMFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLLGP 120 SAAAAAAAPP RMQRHQQSHH RSSLLLPNSP SLNPGGGYPG FFSGAGGFHP QEPAMPLTLP 180 TTTQEFMLGT HSGLPMVSAS ALLNHLHGAS HHHQLLVKEE ISSNMIVFGS DQQSCSSSDG 240 LAAPHSHHHN GHREFILDGY SYGGGYGNSC IDQVDNDKLF QHHQQDQAQE QQQQIVYNYD 300 EIKQLLMNTS TTSNNINAGQ DHGGSMEAGL IGSQGKVTMM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096205 | 1e-124 | FP096205.1 Phyllostachys edulis cDNA clone: bphylf043l07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824972.1 | 1e-119 | transcription factor RAX2-like | ||||
TrEMBL | A0A0E0DBN3 | 0.0 | A0A0E0DBN3_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI04G05540.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-76 | myb domain protein 36 |