PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G02890.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 426aa    MW: 46243.4 Da    PI: 7.0135
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G02890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.31.2e-06292349562
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      +r +r   NR +A++s ++K + + eL++k  +L++e ++L  ++  ++ +  +l s+
  OMERI04G02890.1 292 RRVKRILNNRASATKSKEKKIKHVGELQRKLHVLQSETTTLGAQVTVMQRNNNELVSQ 349
                      5789999********************************9988877766666666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-12288352IPR004827Basic-leucine zipper domain
PfamPF077169.1E-5289338IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.68290353IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.06E-9292348No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-7292349No hitNo description
CDDcd147035.51E-18293344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEGEPSRRLS LLDQCGDGSE DPVVPPRVPT ILNLASHHRI DRSKFLPLIH PAPARFISST  60
GSSFSPYSEP PPSTPMLEVG SGFGLEDLYS FLPNPFFSME SIGLPPYDAV DVPPVIPLAL  120
RSGRSNQGLS SKLPLIVGHR RSHSDIPFGY SQEHPQMSPV ASVKPEVTTI EGHQLEDVAA  180
AALKDMGIQA WSPSGSIDKE FKSSGAGSTA HHCRSLSVDG FMMGNLNFGV VAQQMSSPPL  240
LTTKVNVGGG EPIGSAASPF AAELANVKFT EDEKKKIVMD KSLSEIVLTD PRRVKRILNN  300
RASATKSKEK KIKHVGELQR KLHVLQSETT TLGAQVTVMQ RNNNELVSQN NELKTRLQAM  360
DQLAQLGDAL TSRLAAEAQH LRAVVSEISD PNLPSGPHQQ LSSDMDQLQQ LLTQRQTSQI  420
QQNQPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8550530.0CR855053.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635275.10.0uncharacterized protein LOC107275813
TrEMBLA0A0E0DAW30.0A0A0E0DAW3_9ORYZ; Uncharacterized protein
STRINGOMERI04G02650.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147931112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.12e-42bZIP family protein