PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G02430.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 394aa    MW: 40568.1 Da    PI: 6.7931
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G02430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-09329353227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC+ +++ G C+ G++C++aHg+
  OMERI04G02430.1 329 KTALCSKWRK-GRCHNGATCRYAHGE 353
                      8*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.71E-7326358IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012327353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-11327358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948328354IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6329353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.117365394IPR000571Zinc finger, CCCH-type
SMARTSM0035618366393IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MADPNGRSRR LPTGDPDQAN ASPSRPVSAV DGVIGGEGAG EATYSHFPPG AYEPTDVAYG  60
IRDAANDERA RARARHDQGG GAHDHHHDRP RQDQRGEAHL HDLPGEKSEV PDVGPSDQQQ  120
GKEASDTDMA PLAALAKRSY DVNFPPLHEH RAAPVPAPAP ASAPAPAGAM GSSSAQVQGD  180
GAPDNHDHDP RHLPRQDQRG GAHPDDLHGE KTIGSGSDIL DDSKRGMINA GPQHGRITTD  240
TTSNGGSGSG SDKGKGVSYA GDKPASSSSS SSSAGQQGSD TDKTPSAAAA ASSYAVNFPP  300
LLPAPAPVPT PAPAPAVAGA MGVANAHHKT ALCSKWRKGR CHNGATCRYA HGEEEQRIVP  360
EMRVGGGGRP CPELAAAKGW CRYGLNCKYC HGGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646504.10.0zinc finger CCCH domain-containing protein 47
SwissprotQ8GW050.0C3H47_ORYSJ; Zinc finger CCCH domain-containing protein 47
TrEMBLA0A0E0DAQ80.0A0A0E0DAQ8_9ORYZ; Uncharacterized protein
STRINGOMERI04G02240.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166371112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]