PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G02400.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 339aa    MW: 37592 Da    PI: 4.9174
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G02400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.83.7e-48381672128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       pGfrFhPtdeelv++yL++k++gk+l++ e+ike+diyk++P+d+  +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s
  OMERI04G02400.1  38 LPGFRFHPTDEELVTFYLRRKIAGKRLSI-EIIKEMDIYKHDPSDFLkTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPICS 130
                      69***************************.89*************96345556789*************************************9 PP

              NAM  95 k...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +   +g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  OMERI04G02400.1 131 AaaaGGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 167
                      88877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-5337202IPR003441NAC domain
PROSITE profilePS5100551.71737202IPR003441NAC domain
PfamPF023656.9E-2539167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVPSAEMKRG CEDELGAGDV ILRGVEEVEE EEDDDLVLPG FRFHPTDEEL VTFYLRRKIA  60
GKRLSIEIIK EMDIYKHDPS DFLKTSTVGS EKEWYFFCLR GRKYRNSIRP NRVTGSGFWK  120
ATGIDRPICS AAAAGGDCIG LKKSLVYYRG SAGKGTKTDW MMHEFRLPPP PSSADDLAAG  180
RSSPPPSLQE AEVWTICRIF QRNITHKKQP QPQLAVAAAA VPAPVPDATS SITGSLESDS  240
AGDDVVEYMN TLQPPPASNV NGGYSNQHYF QEQWNSSSND NTTVFHQHAA AMAGFGHDQS  300
VLSSPAPSDF YYKDGCNDDI YRMVMELADP SLFYDHIYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-443920822174NAC domain-containing protein 19
3swm_B3e-443920822174NAC domain-containing protein 19
3swm_C3e-443920822174NAC domain-containing protein 19
3swm_D3e-443920822174NAC domain-containing protein 19
3swp_A3e-443920822174NAC domain-containing protein 19
3swp_B3e-443920822174NAC domain-containing protein 19
3swp_C3e-443920822174NAC domain-containing protein 19
3swp_D3e-443920822174NAC domain-containing protein 19
3ulx_A3e-44241672140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126151e-167CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646514.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK557e-80NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0E0DAQ50.0A0A0E0DAQ5_9ORYZ; Uncharacterized protein
STRINGORGLA07G0020700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-75NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]