PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G02350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 245aa MW: 25820.1 Da PI: 11.9124 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 62.6 | 1.5e-19 | 50 | 154 | 24 | 130 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaaksaakskksqksaasalnlakes 114 ls+++a+ f+d+qd+LG+d++sk+ieWL+++a +ai++l+++ + + ++ +++ + + + + + ++++a+++k++ a+ ++ e+ OMERI04G02350.1 50 LSVPTAIVFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSL--DCS-FVLPNAAQLLTRRRRRPssgRPSAEQACTRKATVAAS--PGKSGEK 138 89****************************************..444.3344444444443344321144444444444444444..7777799 PP TCP 115 rakarararertrekm 130 r k r+r r +e+ OMERI04G02350.1 139 RRKTRSRCAARRAERI 154 9999999777766654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.287 | 21 | 88 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 8.7E-17 | 50 | 161 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEEVVVGKER KRPRCALVGV GVGGHGGARG GRAGWRAQRR ARRTSTAKWL SVPTAIVFYD 60 IQDRLGVDQP SKAIEWLIRA AAAAIDALPS LDCSFVLPNA AQLLTRRRRR PSSGRPSAEQ 120 ACTRKATVAA SPGKSGEKRR KTRSRCAARR AERIAKLRAR REGWMPRREA STSAASGGQS 180 WIRKPSTPRS GGLCSGAGEG EGGGGGSMGE IEEDELKHGG ERSGATAGGE GRQGGGAERG 240 GGGRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-12 | 50 | 89 | 16 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-12 | 50 | 89 | 16 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004314 | 0.0 | AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0DAP9 | 1e-166 | A0A0E0DAP9_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI07G02160.1 | 1e-123 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP54256 | 2 | 2 |