PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G02350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 245aa    MW: 25820.1 Da    PI: 11.9124
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G02350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP62.61.5e-195015424130
              TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...kaaksaakskksqksaasalnlakes 114
                      ls+++a+ f+d+qd+LG+d++sk+ieWL+++a +ai++l+++  + + ++ +++ +  +   + +   + ++++a+++k++  a+    ++ e+
  OMERI04G02350.1  50 LSVPTAIVFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSL--DCS-FVLPNAAQLLTRRRRRPssgRPSAEQACTRKATVAAS--PGKSGEK 138
                      89****************************************..444.3344444444443344321144444444444444444..7777799 PP

              TCP 115 rakarararertrekm 130
                      r k r+r   r +e+ 
  OMERI04G02350.1 139 RRKTRSRCAARRAERI 154
                      9999999777766654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136915.2872188IPR017887Transcription factor TCP subgroup
PfamPF036348.7E-1750161IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEEVVVGKER KRPRCALVGV GVGGHGGARG GRAGWRAQRR ARRTSTAKWL SVPTAIVFYD  60
IQDRLGVDQP SKAIEWLIRA AAAAIDALPS LDCSFVLPNA AQLLTRRRRR PSSGRPSAEQ  120
ACTRKATVAA SPGKSGEKRR KTRSRCAARR AERIAKLRAR REGWMPRREA STSAASGGQS  180
WIRKPSTPRS GGLCSGAGEG EGGGGGSMGE IEEDELKHGG ERSGATAGGE GRQGGGAERG  240
GGGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1250891655Putative transcription factor PCF6
5zkt_B6e-1250891655Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0DAP91e-166A0A0E0DAP9_9ORYZ; Uncharacterized protein
STRINGORUFI07G02160.11e-123(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5425622