PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G00160.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 855aa MW: 92710.2 Da PI: 5.1191 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.4 | 1.1e-07 | 50 | 81 | 1 | 27 |
--S---SGGGGTS.....--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.....tCkyGdrCkFaHgp 27 +kt+lC+ff+r C++Gd+C++aH++ OMERI04G00160.2 50 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 81 8**********88*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-11 | 46 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-6 | 47 | 86 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.253 | 49 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 50 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.70.330 | 3.3E-6 | 128 | 214 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
SuperFamily | SSF54928 | 2.47E-5 | 128 | 212 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS51687 | 36.947 | 258 | 855 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 1.57E-45 | 260 | 286 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.57E-45 | 318 | 421 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.57E-45 | 480 | 607 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 1.3E-54 | 503 | 607 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 2.1E-9 | 547 | 609 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 2.13E-7 | 553 | 607 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 1.3E-54 | 746 | 795 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 1.57E-45 | 751 | 855 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 1.3E-54 | 830 | 855 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001510 | Biological Process | RNA methylation | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MEMEDNKAPS PPPPMESDVA GEKRKREDDE SSSAVLAAAN NTGGAQHPMW KTSLCSFFRR 60 RAASSADGCS HGDSCRYAHS EDELRPRPDG TWDPTSDRAK KLRKVAANEV EEEVVTVDDK 120 ALDKCLVGLP RGWANDRLKT FLQDKATTTT SFIILSCFTT GISYATAKKK KGMTVGFVTF 180 ENIEQLKNAI EVLTENQSGG KEIKIADANR RSHQKLHTEK PVSDNGVATE NGTSVDVPPG 240 ETSAPEAAIS NKKSVRDAVT PLAHMSYNDQ LEHKKNSVAQ ILKRLTRNAR KACPTGIPLP 300 DWVFKSKEIG GLPCKLEGIL ESPVINGYRN KCEFSVGFSL EGKKTVGFML GNFREGVTAV 360 EEPVDCPNVS EISCKYALMF QDFLQSSSLP VWNRVDNCGF WRQFTVREGR CPAQAVAQNA 420 ETQISEVMLI VQVCSTGVDD ALMKDEFDKL TVALQQGAAT CSPPLPLTTI VVQDHKGISN 480 AAPADCPLIP LLVPKVDQSE GTVDKTRIHD HIGNLRFSIS PTAFFQVNTL TAERLYTLAG 540 DWANLNSGTL LFDVCCGTGT IGLTLAHRVG MVVGIEMNES AVSDAERNAL INGVSNCRFV 600 CGKAEDVMGS LLTEYLGSPQ QDIPVSEGAV SGTVKDEEVI DGSKNSGENL DSSMQKNDNG 660 ESQQLGDAPA DSSSSAIDEI KGNSNDRVGN GLEGSHDEYN EVAGEDIHGE ASLINESADL 720 KVSDCLEDRK TSDDGSSISN NDVTAATACQ FEDIVAIVDP PRVGLHPTVI KALRTHPRIR 780 RLVLVANAIE LCTPSSEKQE KNKGNRGWRT MSSAGLARQR TKSMPNSEPF VPKRAMAVDL 840 FPHTSHCEMV MLFER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj2_A | 3e-16 | 517 | 614 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_B | 3e-16 | 517 | 614 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_C | 3e-16 | 517 | 614 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_D | 3e-16 | 517 | 614 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq1_A | 3e-16 | 517 | 614 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_A | 3e-16 | 517 | 614 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_B | 3e-16 | 517 | 614 | 274 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120156 | 0.0 | AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636996.1 | 0.0 | zinc finger CCCH domain-containing protein 24 isoform X1 | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A0E0D9W9 | 0.0 | A0A0E0D9W9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI04G00140.2 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8493 | 31 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.2 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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