PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G00160.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 821aa    MW: 88924.8 Da    PI: 5.0206
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G00160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-075081127
                     --S---SGGGGTS.....--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.....tCkyGdrCkFaHgp 27
                     +kt+lC+ff+r        C++Gd+C++aH++
  OMERI04G00160.1 50 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 81
                     8**********88*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.8E-124687IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-64786IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2534982IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-55081IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.70.3301.8E-5132180IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168736.947224821IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.36E-45226252IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.36E-45284387IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.36E-45446573IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.2E-54469573IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.0E-9513575IPR025714Methyltransferase domain
CDDcd024402.03E-7519573No hitNo description
Gene3DG3DSA:3.40.50.1501.2E-54712761IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.36E-45717821IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.2E-54796821IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MEMEDNKAPS PPPPMESDVA GEKRKREDDE SSSAVLAAAN NTGGAQHPMW KTSLCSFFRR  60
RAASSADGCS HGDSCRYAHS EDELRPRPDG TWDPTSDRAK KLRKVAANEV EEEVVTVDDK  120
ALDKCLGISY ATAKKKKGMT VGFVTFENIE QLKNAIEVLT ENQSGGKEIK IADANRRSHQ  180
KLHTEKPVSD NGVATENGTS VDVPPGETSA PEAAISNKKS VRDAVTPLAH MSYNDQLEHK  240
KNSVAQILKR LTRNARKACP TGIPLPDWVF KSKEIGGLPC KLEGILESPV INGYRNKCEF  300
SVGFSLEGKK TVGFMLGNFR EGVTAVEEPV DCPNVSEISC KYALMFQDFL QSSSLPVWNR  360
VDNCGFWRQF TVREGRCPAQ AVAQNAETQI SEVMLIVQVC STGVDDALMK DEFDKLTVAL  420
QQGAATCSPP LPLTTIVVQD HKGISNAAPA DCPLIPLLVP KVDQSEGTVD KTRIHDHIGN  480
LRFSISPTAF FQVNTLTAER LYTLAGDWAN LNSGTLLFDV CCGTGTIGLT LAHRVGMVVG  540
IEMNESAVSD AERNALINGV SNCRFVCGKA EDVMGSLLTE YLGSPQQDIP VSEGAVSGTV  600
KDEEVIDGSK NSGENLDSSM QKNDNGESQQ LGDAPADSSS SAIDEIKGNS NDRVGNGLEG  660
SHDEYNEVAG EDIHGEASLI NESADLKVSD CLEDRKTSDD GSSISNNDVT AATACQFEDI  720
VAIVDPPRVG LHPTVIKALR THPRIRRLVL VANAIELCTP SSEKQEKNKG NRGWRTMSSA  780
GLARQRTKSM PNSEPFVPKR AMAVDLFPHT SHCEMVMLFE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A3e-16483580274371Uncharacterized RNA methyltransferase SP_1029
5xj2_A3e-16483580274371Uncharacterized RNA methyltransferase SP_1029
5xj2_B3e-16483580274371Uncharacterized RNA methyltransferase SP_1029
5xj2_C3e-16483580274371Uncharacterized RNA methyltransferase SP_1029
5xj2_D3e-16483580274371Uncharacterized RNA methyltransferase SP_1029
5zq0_A3e-16483580275372Uncharacterized RNA methyltransferase SP_1029
5zq1_A3e-16483580274371Uncharacterized RNA methyltransferase SP_1029
5zq8_A3e-16483580274371Uncharacterized RNA methyltransferase SP_1029
5zq8_B3e-16483580274371Uncharacterized RNA methyltransferase SP_1029
5zth_A3e-16483580275372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201560.0AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636996.10.0zinc finger CCCH domain-containing protein 24 isoform X1
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0E0D9W80.0A0A0E0D9W8_9ORYZ; Uncharacterized protein
STRINGOMERI04G00140.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]