PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G38240.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 88aa MW: 9692.16 Da PI: 4.7235

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G38240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.6	1.6e-09	4	48	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++ E ++ +a + + ++ +W++Ia +g g+t+ +++ ++ OMERI03G38240.1 4 SWSESENARFEQALATYDTDnpnRWDLIATAVGGGKTADDVRRHY 48 6*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.7E-7	1	54	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.516	1	52	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.35E-11	4	59	IPR009057	Homeodomain-like
Pfam	PF00249	4.3E-8	4	48	IPR001005	SANT/Myb domain
CDD	cd00167	1.72E-7	4	48	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.3E-6	4	55	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MAASWSESEN ARFEQALATY DTDNPNRWDL IATAVGGGKT ADDVRRHYDH LQHDVTTIDD 60 DHSHAAGDAL PNANNNNNNT TKGNRNQT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC128647	1e-114	AC128647.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBb0062G19, complete sequence.
GenBank	AP014959	1e-114	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-114	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879511.1	6e-45	protein RADIALIS-like 3
Swissprot	F4JVB8	3e-16	RADL1_ARATH; Protein RADIALIS-like 1
TrEMBL	A0A0E0D9Q7	4e-57	A0A0E0D9Q7_9ORYZ; Uncharacterized protein
STRING	OMERI03G37840.1	6e-58	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	1e-18	RAD-like 1

Publications ? help Back to Top
Zhang M, et al. ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development. Plant Physiol., 2013. 163(2): p. 713-20 [PMID:23922269]