PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G38000.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 310aa MW: 33711.2 Da PI: 11.0089

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G38000.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	38.2	3e-12	200	289	10	99
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e ++d ++P+ar+++i++a++ + s ea l+ ka e+f+ ++ ++ +a + +++++ ++++av + + ++fl d vp++ OMERI03G38000.1 200 AEAVADHGAGSFPMARVRQIMRAEDATIRPSNEAVFLINKATEIFLKRFADDAYRNALKDRKKSIVYDNLSTAVCNQKRYKFLSDFVPQK 289 56777888889****************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.45E-19	188	289	IPR009072	Histone-fold
Pfam	PF00808	9.1E-13	210	273	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.6E-20	211	288	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAGKKKALTN PASPSASAST STPKKSTAIA KDRSTPKPRK NPNPNPKDEA PPPPANNKRR 60 NPQGGSKRNK KQDASADAGT PSKKPKRQPP EPKPRKHMGA KSEKPHRVSG EGEKPTPTKK 120 KKKKESNKEP KREKQQASAP MSTPSKKNKE AKRDTAGAGK PTPTKRKLAD VDPPQGRPSG 180 EGQASSPTPA KKRKDKAAAA EAVADHGAGS FPMARVRQIM RAEDATIRPS NEAVFLINKA 240 TEIFLKRFAD DAYRNALKDR KKSIVYDNLS TAVCNQKRYK FLSDFVPQKV TAEDALKAPV 300 SSQHYESGYE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	95	KKPKRQPPEPKPRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103607	0.0	AK103607.1 Oryza sativa Japonica Group cDNA clone:J033133H15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628750.1	1e-148	nuclear pore complex-interacting protein family member B13
Refseq	XP_015628751.1	1e-148	nuclear pore complex-interacting protein family member B13
TrEMBL	A0A0E0D9N0	0.0	A0A0E0D9N0_9ORYZ; Uncharacterized protein
STRING	OMERI03G37590.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12826	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	6e-27	nuclear factor Y, subunit C10