PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G37280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 317aa    MW: 34238.9 Da    PI: 4.5271
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G37280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.31.5e-1981521128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknr..atk....sgy 82 
                      l pG+ F+P+d+ l++ +L++k+++ ++e  + i+++d+y+++P ++         ++++++ wyfF++ + +++++   +r  a+     +++
  OMERI03G37280.1   8 LEPGYAFRPSDDGLITLFLRPKIAKIPFEH-RLINHADVYSADPAEIVGehrpapGTHGSSSVWYFFCSPRYTSKRKASGRRlrAVGggggESV 100
                      579************************999.89**************7335666655557779*****99877776554444215444444778 PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                      Wk+ g +k+v  ++g+ vg  + + +       +g+a++ ++  W+m ey l
  OMERI03G37280.1 101 WKSEGGKKAVNGADGRRVGYLQKFSYGvyesssSGSARSFTRLGWCMTEYGL 152
                      ********************999999666777779999999*********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-326170IPR003441NAC domain
PROSITE profilePS5100528.7078170IPR003441NAC domain
PfamPF023651.2E-1210151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDDDEIALEP GYAFRPSDDG LITLFLRPKI AKIPFEHRLI NHADVYSADP AEIVGEHRPA  60
PGTHGSSSVW YFFCSPRYTS KRKASGRRLR AVGGGGGESV WKSEGGKKAV NGADGRRVGY  120
LQKFSYGVYE SSSSGSARSF TRLGWCMTEY GLDDATDGAD KQVLCKVYRS PRAVCTEART  180
AAAKCSGSKR KADDGADHPE EAPPSSRPRQ EEAGGEHDEQ PELLPELDLD ALLSAPTDEN  240
LESTFSTAAT EQYMRYLMND VPLPWAPTME LVDGGAGGGD EFIQTANGPC MDDEVQVFAR  300
LAAGETLDDI LGTDPAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-12516914164NO APICAL MERISTEM PROTEIN
1ut4_B1e-12516914164NO APICAL MERISTEM PROTEIN
1ut7_A1e-12516914164NO APICAL MERISTEM PROTEIN
1ut7_B1e-12516914164NO APICAL MERISTEM PROTEIN
3swm_A1e-12517017168NAC domain-containing protein 19
3swm_B1e-12517017168NAC domain-containing protein 19
3swm_C1e-12517017168NAC domain-containing protein 19
3swm_D1e-12517017168NAC domain-containing protein 19
3swp_A1e-12517017168NAC domain-containing protein 19
3swp_B1e-12517017168NAC domain-containing protein 19
3swp_C1e-12517017168NAC domain-containing protein 19
3swp_D1e-12517017168NAC domain-containing protein 19
4dul_A1e-12516914164NAC domain-containing protein 19
4dul_B1e-12516914164NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.10.0NAC transcription factor NAM-2
TrEMBLA0A0E0D9D40.0A0A0E0D9D4_9ORYZ; Uncharacterized protein
STRINGOMERI03G36870.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-10NAC family protein