PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G37280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 34238.9 Da PI: 4.5271 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.3 | 1.5e-19 | 8 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknr..atk....sgy 82 l pG+ F+P+d+ l++ +L++k+++ ++e + i+++d+y+++P ++ ++++++ wyfF++ + +++++ +r a+ +++ OMERI03G37280.1 8 LEPGYAFRPSDDGLITLFLRPKIAKIPFEH-RLINHADVYSADPAEIVGehrpapGTHGSSSVWYFFCSPRYTSKRKASGRRlrAVGggggESV 100 579************************999.89**************7335666655557779*****99877776554444215444444778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128 Wk+ g +k+v ++g+ vg + + + +g+a++ ++ W+m ey l OMERI03G37280.1 101 WKSEGGKKAVNGADGRRVGYLQKFSYGvyesssSGSARSFTRLGWCMTEYGL 152 ********************999999666777779999999*********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-32 | 6 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.707 | 8 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-12 | 10 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MDDDEIALEP GYAFRPSDDG LITLFLRPKI AKIPFEHRLI NHADVYSADP AEIVGEHRPA 60 PGTHGSSSVW YFFCSPRYTS KRKASGRRLR AVGGGGGESV WKSEGGKKAV NGADGRRVGY 120 LQKFSYGVYE SSSSGSARSF TRLGWCMTEY GLDDATDGAD KQVLCKVYRS PRAVCTEART 180 AAAKCSGSKR KADDGADHPE EAPPSSRPRQ EEAGGEHDEQ PELLPELDLD ALLSAPTDEN 240 LESTFSTAAT EQYMRYLMND VPLPWAPTME LVDGGAGGGD EFIQTANGPC MDDEVQVFAR 300 LAAGETLDDI LGTDPAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-12 | 5 | 169 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-12 | 5 | 169 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-12 | 5 | 169 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-12 | 5 | 169 | 14 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-12 | 5 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-12 | 5 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-12 | 5 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-12 | 5 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-12 | 5 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-12 | 5 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-12 | 5 | 170 | 17 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-12 | 5 | 170 | 17 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-12 | 5 | 169 | 14 | 164 | NAC domain-containing protein 19 |
4dul_B | 1e-12 | 5 | 169 | 14 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629679.1 | 0.0 | NAC transcription factor NAM-2 | ||||
TrEMBL | A0A0E0D9D4 | 0.0 | A0A0E0D9D4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G36870.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 3e-10 | NAC family protein |