PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G37200.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 1668aa    MW: 184392 Da    PI: 5.4563
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G37200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-0814681509144
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                       r +W++ E ++++++ +q+G++ ++ I + ++  ++++q++ ++
  OMERI03G37200.1 1468 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 1509
                       569*******************.*********.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513757.454939IPR002885Pentatricopeptide repeat
PfamPF015350.0191439IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.2214074IPR002885Pentatricopeptide repeat
PfamPF015350.144265IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.82975109IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.837110140IPR002885Pentatricopeptide repeat
PfamPF015350.013115140IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.523141175IPR002885Pentatricopeptide repeat
PfamPF015350.027144172IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.985176211IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.607212242IPR002885Pentatricopeptide repeat
PfamPF015350.022217239IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.977243283IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.16319349IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.1E-7329385IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.353350380IPR002885Pentatricopeptide repeat
PfamPF015357.3E-4353377IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.0E-4353377IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.415385419IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.1E-7423482IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.424451485IPR002885Pentatricopeptide repeat
PfamPF015351.3E-5453483IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.536486521IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.1E-7552609IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.744554584IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.53588622IPR002885Pentatricopeptide repeat
PfamPF144326.3E-7625736IPR032867DYW domain
SuperFamilySSF466898.97E-1014591515IPR009057Homeodomain-like
PfamPF159638.3E-2514611542No hitNo description
SMARTSM007177.5E-914671515IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-514681510IPR009057Homeodomain-like
CDDcd001672.65E-614701510No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1668 aa     Download sequence    Send to blast
MLRAAYRPGL FLRNNLLALY CRCGDMRHAR LLFDGMPRRD AVSWNTLIAG YSGLGSHRLA  60
LDAFRGARAS GDGADRFTFA AALASCARAG DWRNGRVVHG LAVVSGLART AFLTNSVIDM  120
YAKCGMIDEV RLVFDRAEER DEASWNLLLS AYVRMGWPEV AVNVLVWMHR SGVKLDSFAL  180
GGILKACSEL GDSEDVRRML HGCVVKVGLD LDVFVGSAMV DMYAKNGGLE EAIKVFDCIP  240
NQNVVVYNAM IAGFARLGND PCPEIRIEAV TLFSNMLKKR IKPSKFTFKS VLEVCNLTNA  300
VRCGRQIHAH VILSGLQGDE FIASVLINLY SKARSVNDSL RCFDMTLKED VFIWTSMITA  360
FVQNEHFEKA LYLFRELLYT RKGTDQFTIS SVMSACAALS VPTTCKQIHC HAVKTGLDQF  420
TVSGNSQIAM YRNIGDLKAS KQTFEQISCL DTFSWSAMIL SYAIHGYENK ALELFEKMKN  480
LGVMMNDIAS LAVLIACSHQ GLADEGLRYY ENTIPDDGFS LDVKFKACMV DLLGRVGKIA  540
DAEDFIMNSG SENDPILWHA LLRACRVHGD KERCTKIGEK LMELEPFSAS SYVMLYNLYM  600
DAGKMSLAMR TRGLMRERGI TNEAGISWTD FGGSIHNFID GDNSCSHNTI HTTLEELLVR  660
VKQKTQHGGT NIWELEFQSR KLSESSISRH GELLAVAFGL TTLPSVAPVR VMKNQRISWE  720
SHETLKLLSE GENREITGRL IALLNQGNLN LIAKDGEVAT RAGEGRGSCS GHIAMIDDEA  780
DFGNITDATE GQAAAKFRPK ARAKPCKTSL PSRSLAPHPT VESTDENVET LNKDSTSHEQ  840
SVDKKAASLG CHGSACASGG ILDTPSEDAV TVSLGLVNNP DVALDSSTVF ASSVHKVSQN  900
EENNDDLSHV ATHKESMVVS DTQAPPTCCS AKTIDDLADF EGLCDDTHVE EERVAKFQPK  960
FRVKTSMAAS KSQRTNQKAG VSTVDVVSQN KEDGKDQAGC NDKQLHSPTR HQESVQISYS  1020
QAHLGTHNST IDDVANSDSI MEEPAQEEMA AKFQPRLRPK AGGASPGVAE TIDAACVATP  1080
EFGVSSADVV SQDTEEDSHR EGLSDDSCQK YIDEEAITTS GTGPPQDLDA AVDLDSHAEM  1140
VNPHPDGSPL IIGEPSAETT VKFQPYVRRK KGKGKSVSFV PSNVSHAHTP TDTNSETSNS  1200
SHFCKDIATG ESLSNLPQQA SEKICISGEH HPDDQECNDP ENQYHEGEPY DHVIEQEPER  1260
DVRETGTPMI LRNRGKLQKD GIPEHTADDI MDEDFGEPPS DEQDNDSGDE YTARGKQKGR  1320
RKSREKNINK EPSRGSKRTS GDSTIEESQK QKLQKNKSKT SSGGQKKTSK DSSVEQPEKK  1380
LTHRIRRKRM EEVKTLLETP DHEIDRMKLS GKEIPSGPSS SNHSTSQFGD MDDEYNEQDN  1440
WDNDRTENHV VENTTKLNYH SYMNRQTRAK WSKSETDKFY EGLQQFGSDF AMIQHLFPDK  1500
SRNQVRQKFK AEEKKHPMQV HDAIMHRSRD NLYFKEVIKK LNIEDVQPDI NNTHEQEGTS  1560
NEEDPGNKNI PGGLINEEEN GLDWSDKELD MHRSEVEEKE HVSTNDDDDD DLGDAKMEVV  1620
QCEDKVRGGA SDGIVRLSTG RPSQSHHSLD PLALLSMASS SYRSLASP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-64156617337PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0968560.0AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633004.10.0uncharacterized protein LOC9267825
TrEMBLA0A0E0D9C40.0A0A0E0D9C4_9ORYZ; Uncharacterized protein
STRINGORUFI03G42160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-31MYB_related family protein