PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G36650.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 352aa    MW: 36886.4 Da    PI: 4.4715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G36650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.31e-1261463127
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy.. 82 
                      +G+ F+P+de+l + yL+  +++++       +++ ++ +d+y++ P +  +       + +++ + wy F++ +   ++g rk r++ sg   
  OMERI03G36650.1   6 KGLVFSPSDEQLTDGYLRSYLARTSlddlpSAAASYFHVADVYSAPPDQVVAglapapgTGDGDGRVWYVFTPVRVLGSRGARKARTVGSGGgg 99 
                      6999****************99999777643333459999*********97446676654455778********************87754333 PP

              NAM  83 ...WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyr 127
                         W+a g  k+v+   +++ g  + + +  k  +   +k  W+m ey+
  OMERI03G36650.1 100 gecWHAEGGPKDVKG--SAAGGKLQKFSYKiKTASGAVVKPGWLMVEYS 146
                      445**********87..6666777788887334455557*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-224161IPR003441NAC domain
PROSITE profilePS5100519.4884161IPR003441NAC domain
PfamPF023654.3E-97146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAEIGKGLVF SPSDEQLTDG YLRSYLARTS LDDLPSAAAS YFHVADVYSA PPDQVVAGLA  60
PAPGTGDGDG RVWYVFTPVR VLGSRGARKA RTVGSGGGGG ECWHAEGGPK DVKGSAAGGK  120
LQKFSYKIKT ASGAVVKPGW LMVEYSFPGS DHLALCKVYR SPRTSRYGAP SPPPSAASSP  180
SRAGPPPVSS TSGRKRKPEE ESDHPEAPAS SAPRRTLPAP EQHVDVDGAA AGEPDQGGYL  240
STDQLDSVAA FVQEHEGDEE FYKSLGFDER SDPQCWTNFV LSALEEFGPA AAAVAAVEPG  300
PCPEYEEHDD TAAAASSHAY DSATAELVNL SDKEFYDIIF SGDQQDGVEV AG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1333390.0AC133339.3 Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence.
GenBankAC1337780.0AC133778.4 Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0D9440.0A0A0E0D944_9ORYZ; Uncharacterized protein
STRINGOMERI03G36240.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62801545