PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G36600.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 135aa    MW: 14968.1 Da    PI: 10.4242
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G36600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.71e-202761135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++
  OMERI03G36600.1 27 CTDCHTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 61
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.95E-142060No hitNo description
PROSITE profilePS5011413.312157IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-182185IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-162561IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-152661No hitNo description
PfamPF003202.0E-182761IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDSSSVEKGS GSIDPDERTA SGEPKACTDC HTTKTPLWRG GPSGPKSLCN ACGIRYRKKR  60
REALGLDAGE GGAERQEKKS KRERGEEVTM ELRMVGFGKE VVLKQRRRMR RRRRLGEEEK  120
AAILLMALSS GVIYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110QRRRMRR
2106111RRMRRR
3106113RRMRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737090.0AK073709.1 Oryza sativa Japonica Group cDNA clone:J033058P14, full insert sequence.
GenBankCT8319410.0CT831941.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631979.12e-83GATA transcription factor 16
TrEMBLA0A0E0D9383e-91A0A0E0D938_9ORYZ; Uncharacterized protein
STRINGOMERI03G36180.16e-92(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-29GATA transcription factor 15