PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G36430.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 324aa    MW: 35194 Da    PI: 4.3937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G36430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.15.1e-2191501128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknr.atksgyWka 85 
                      l pG+ FhP+d+ l++ +L++++++ ++e  + i+++d+y+++P +L         ++++++ wyfF++ + +++  t+ r++r a  +++Wk+
  OMERI03G36430.1   9 LEPGYVFHPSDDGLITLFLRPSITKVPFED-RLINRADVYSADPAELVGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRiAGGESVWKS 101
                      579************************998.88**************7335666655557779*****87644431144455554778999*** PP

              NAM  86 tgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                       g +k+v+ ++g+ vg  + + +       +g+a++ ++  W+m ey l
  OMERI03G36430.1 102 EGGKKAVIGADGRRVGYLQKFSYGvyespsSGSARTFTRLGWCMTEYGL 150
                      *****************999999666777779999999*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-337169IPR003441NAC domain
PROSITE profilePS5100530.1479169IPR003441NAC domain
PfamPF023653.4E-1211149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MADDDEIALE PGYVFHPSDD GLITLFLRPS ITKVPFEDRL INRADVYSAD PAELVGEHRP  60
APGTHGSSSV WYFFCSPRFT SKRKTSGRRQ RIAGGESVWK SEGGKKAVIG ADGRRVGYLQ  120
KFSYGVYESP SSGSARTFTR LGWCMTEYGL DDDAIDGADK QVLCKVYRSP RAVCAEARTA  180
AAAAKSAYSP RSGSKRKADD GADHPEAPPS ARPRQEEAGS EHDEQPAILP ELDLDALLSA  240
PMDDNLGVEF DTATTEQYMR YLMNDEPLPW APTMEAVDGV AGGGDEFIET TNGPCMGEEE  300
IIQRLAAGEI LDDILGTNPN EASF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-13616814164NO APICAL MERISTEM PROTEIN
1ut4_B8e-13616814164NO APICAL MERISTEM PROTEIN
1ut7_A8e-13616814164NO APICAL MERISTEM PROTEIN
1ut7_B8e-13616814164NO APICAL MERISTEM PROTEIN
3swm_A8e-13616917168NAC domain-containing protein 19
3swm_B8e-13616917168NAC domain-containing protein 19
3swm_C8e-13616917168NAC domain-containing protein 19
3swm_D8e-13616917168NAC domain-containing protein 19
3swp_A8e-13616917168NAC domain-containing protein 19
3swp_B8e-13616917168NAC domain-containing protein 19
3swp_C8e-13616917168NAC domain-containing protein 19
3swp_D8e-13616917168NAC domain-containing protein 19
4dul_A8e-13616814164NAC domain-containing protein 19
4dul_B8e-13616814164NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.10.0NAC domain-containing protein 71-like
RefseqXP_015629670.10.0NAC domain-containing protein 71-like
TrEMBLA0A0E0D9190.0A0A0E0D919_9ORYZ; Uncharacterized protein
STRINGOMERI03G36030.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-16NAC family protein