PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G36390.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 388aa    MW: 41962.5 Da    PI: 6.3251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G36390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.46.9e-2091541128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk.....sg 81 
                      l pG+ FhP+d+ l++ +L++++++ ++e    i+++d+y+++P +L         ++++++ wyfF++ + +++  t+ r++ra+      ++
  OMERI03G36390.1   9 LEPGYVFHPSDDALITLFLRPSIAKIPFED-CLINHADVYSADPAELAGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRAVGgggggES 101
                      579**********************99877.56**************8436676655557779*****98755441155677776544444477 PP

              NAM  82 yWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                      +Wk+ g +k+v+ ++g+ vg  + + +       +g+a++ ++  W+m ey l
  OMERI03G36390.1 102 VWKSEGGKKAVIGADGRRVGYLQKFSYGvyespsSGSARTFTRLGWCMTEYGL 154
                      8********************999999666777779999999*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-307169IPR003441NAC domain
PROSITE profilePS5100527.2489173IPR003441NAC domain
PfamPF023654.3E-1211153IPR003441NAC domain
SuperFamilySSF1019414.97E-12169260IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MADDDEIALE PGYVFHPSDD ALITLFLRPS IAKIPFEDCL INHADVYSAD PAELAGEHRP  60
APGTHGSSSV WYFFCSPRFT SKRKTSGRRQ RAVGGGGGGE SVWKSEGGKK AVIGADGRRV  120
GYLQKFSYGV YESPSSGSAR TFTRLGWCMT EYGLDDDAID GADKQVLCKR KTSGRRQRAV  180
GGGGGGESVW KSEGGKKAVI GADGRRVGYL QKFSYGVYES PSSGSARTFT RLGWCMTEYG  240
LDDDAIDGAD KQVLCKVYRS PRSVCAEARM AAAAAKSADS PRSGSKRKAD DGADHPEARP  300
RQEEAGSEHG EQPELDLDAM LSAPMDDNLG VEFDTATTEQ YMRYLMNDEP LPWAPTMEVA  360
GGGDDERSLC GRGDHRAAGC RRNPRRHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0966870.0AC096687.5 Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.11e-109NAC domain-containing protein 71-like
RefseqXP_015629670.11e-109NAC domain-containing protein 71-like
TrEMBLA0A0E0D9120.0A0A0E0D912_9ORYZ; Uncharacterized protein
STRINGOMERI03G35970.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.26e-11NAC family protein