PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G35600.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 319aa    MW: 35417.1 Da    PI: 7.1466
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G35600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52171421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd+elv +yL++k++g++l++  +i+evd+yk++PwdLp+++  + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v  
  OMERI03G35600.1  17 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP 109
                      79****************************.88***************8777899*************************************99 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g++ g+kk Lvfy g+ap+g+ktdW+mheyrl
  OMERI03G35600.1 110 -RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 142
                      .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-6411170IPR003441NAC domain
PROSITE profilePS5100560.37717170IPR003441NAC domain
PfamPF023653.2E-2718142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGMGMRRERD AEAELNLPPG FRFHPTDDEL VEHYLCRKAA GQRLPVPIIA EVDLYKFDPW  60
DLPERALFGA REWYFFTPRD RKYPNGSRPN RAAGNGYWKA TGADKPVAPR GRTLGIKKAL  120
VFYAGKAPRG VKTDWIMHEY RLADAGRAAA GAKKGSLRLD DWVLCRLYNK KNEWEKMQQG  180
KEVKEEASDM VTSQSHSHTH SWGETRTPES EIVDNDPFPE LDSFPAFQPA PPPPTAMMVP  240
KKESMDDATA AAAAAAAAAT IPRNNSSLFV DLSYDDIQGM YSGLDMLPPG DDFYSSLFAS  300
PRVKGTTPRA GAGMGMVPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-12731761174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0676900.0AK067690.1 Oryza sativa Japonica Group cDNA clone:J013120D02, full insert sequence.
GenBankAK0992450.0AK099245.1 Oryza sativa Japonica Group cDNA clone:J013116P10, full insert sequence.
GenBankAK1045510.0AK104551.1 Oryza sativa Japonica Group cDNA clone:006-305-E06, full insert sequence.
GenBankAK1047120.0AK104712.1 Oryza sativa Japonica Group cDNA clone:001-037-H04, full insert sequence.
GenBankAY5968080.0AY596808.1 Oryza sativa (japonica cultivar-group) NAC transcription factor (NAC) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650786.10.0PREDICTED: NAC domain-containing protein 67-like
SwissprotQ75HE50.0NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLA0A0E0D8Q00.0A0A0E0D8Q0_9ORYZ; Uncharacterized protein
STRINGOMERI03G35090.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.18e-81NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]