PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G35410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 527aa    MW: 57655.9 Da    PI: 8.6982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G35410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.73.7e-262704043128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr...atksgyWkatgk 88 
                      pG+rF Ptd+el+ ++Lk+k + ++ ++++ + ik++d++k++  +L+      k+ +  wy Fs+r++ +++g r+ r   +t+ gyWk+   
  OMERI03G35410.1 270 PGVRFTPTDQELIIHFLKPKYNLRDaMPTNIIvIKQLDVCKLNLDELHGdlgLGKSLDGAWYVFSPRSRYKERGVRPARginTTAVGYWKSNSA 363
                      9*******************9988875554445**************9534322334459*******************6544779******** PP

              NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +v++  +ge++g  ++L++  g++p+g+ t+W m+eyr+
  OMERI03G35410.1 364 EADVVDDdDGEVIGRVNSLTLALGHQPRGKATHWRMKEYRI 404
                      ****99878999***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.252268441IPR003441NAC domain
SuperFamilySSF1019411.15E-30269440IPR003441NAC domain
PfamPF023656.7E-15270404IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAAINPVAGE VAAATVKAPP PAMAAVRAPL PANHYSPYHS AAGSYASNTQ STSSPVSPAS  60
PAMISSFSSP FPLHQQRTWQ PQPTTFFQAN PGHAYQQDHL PAVAGRRFFP PPAMQMQYYQ  120
QQQPAAVAME GSGHPMAAPV HSSPLAATSV SNHAAVPDAP PREPAKRRRR NTAITARRGR  180
GRPRDATASR AHSAPPPQQQ QPTTTAPAIT AQRNDDVNQE EDGQSSKNST EEAVAAGGEP  240
PAATSGLAIV PRHGDVGDAG RPVFPYSDVP GVRFTPTDQE LIIHFLKPKY NLRDAMPTNI  300
IVIKQLDVCK LNLDELHGDL GLGKSLDGAW YVFSPRSRYK ERGVRPARGI NTTAVGYWKS  360
NSAEADVVDD DDGEVIGRVN SLTLALGHQP RGKATHWRMK EYRIPQFQIP LGQDSNRLVY  420
NVILLRMKVL DEWVLCKLYH SFAYKQKGKC KVHEEGSKSD RGVQDLSIDD DRKTCDIEAN  480
KPNGGVDNCN VNICDIEMEF YKIEAQMTTM SIYVILRLAN QMEVYKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-1626244711171NO APICAL MERISTEM PROTEIN
1ut4_B2e-1626244711171NO APICAL MERISTEM PROTEIN
1ut7_A2e-1626244711171NO APICAL MERISTEM PROTEIN
1ut7_B2e-1626244711171NO APICAL MERISTEM PROTEIN
3swm_A2e-1626244714174NAC domain-containing protein 19
3swm_B2e-1626244714174NAC domain-containing protein 19
3swm_C2e-1626244714174NAC domain-containing protein 19
3swm_D2e-1626244714174NAC domain-containing protein 19
3swp_A2e-1626244714174NAC domain-containing protein 19
3swp_B2e-1626244714174NAC domain-containing protein 19
3swp_C2e-1626244714174NAC domain-containing protein 19
3swp_D2e-1626244714174NAC domain-containing protein 19
4dul_A2e-1626244711171NAC domain-containing protein 19
4dul_B2e-1626244711171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375070.0AC137507.3 Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0D8M70.0A0A0E0D8M7_9ORYZ; Uncharacterized protein
STRINGOMERI03G34920.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.15e-22NAC domain containing protein 25