PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G35410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 527aa MW: 57655.9 Da PI: 8.6982 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.7 | 3.7e-26 | 270 | 404 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr...atksgyWkatgk 88 pG+rF Ptd+el+ ++Lk+k + ++ ++++ + ik++d++k++ +L+ k+ + wy Fs+r++ +++g r+ r +t+ gyWk+ OMERI03G35410.1 270 PGVRFTPTDQELIIHFLKPKYNLRDaMPTNIIvIKQLDVCKLNLDELHGdlgLGKSLDGAWYVFSPRSRYKERGVRPARginTTAVGYWKSNSA 363 9*******************9988875554445**************9534322334459*******************6544779******** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +v++ +ge++g ++L++ g++p+g+ t+W m+eyr+ OMERI03G35410.1 364 EADVVDDdDGEVIGRVNSLTLALGHQPRGKATHWRMKEYRI 404 ****99878999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 34.252 | 268 | 441 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.15E-30 | 269 | 440 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-15 | 270 | 404 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MAAINPVAGE VAAATVKAPP PAMAAVRAPL PANHYSPYHS AAGSYASNTQ STSSPVSPAS 60 PAMISSFSSP FPLHQQRTWQ PQPTTFFQAN PGHAYQQDHL PAVAGRRFFP PPAMQMQYYQ 120 QQQPAAVAME GSGHPMAAPV HSSPLAATSV SNHAAVPDAP PREPAKRRRR NTAITARRGR 180 GRPRDATASR AHSAPPPQQQ QPTTTAPAIT AQRNDDVNQE EDGQSSKNST EEAVAAGGEP 240 PAATSGLAIV PRHGDVGDAG RPVFPYSDVP GVRFTPTDQE LIIHFLKPKY NLRDAMPTNI 300 IVIKQLDVCK LNLDELHGDL GLGKSLDGAW YVFSPRSRYK ERGVRPARGI NTTAVGYWKS 360 NSAEADVVDD DDGEVIGRVN SLTLALGHQP RGKATHWRMK EYRIPQFQIP LGQDSNRLVY 420 NVILLRMKVL DEWVLCKLYH SFAYKQKGKC KVHEEGSKSD RGVQDLSIDD DRKTCDIEAN 480 KPNGGVDNCN VNICDIEMEF YKIEAQMTTM SIYVILRLAN QMEVYKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-16 | 262 | 447 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-16 | 262 | 447 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-16 | 262 | 447 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-16 | 262 | 447 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-16 | 262 | 447 | 14 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-16 | 262 | 447 | 14 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-16 | 262 | 447 | 14 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-16 | 262 | 447 | 14 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-16 | 262 | 447 | 14 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-16 | 262 | 447 | 14 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-16 | 262 | 447 | 14 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-16 | 262 | 447 | 14 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-16 | 262 | 447 | 11 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-16 | 262 | 447 | 11 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137507 | 0.0 | AC137507.3 Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0D8M7 | 0.0 | A0A0E0D8M7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G34920.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13130 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 5e-22 | NAC domain containing protein 25 |