PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G34530.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 418aa MW: 43836.4 Da PI: 4.7927

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G34530.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42	2e-13	227	279	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + +rrkq+NRe+ArrsR RK a + eLe v +L eN++L +l ++++ OMERI03G34530.1 227 RLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYN 279 789***************************************99988888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-17	223	287	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.392	225	279	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-10	225	279	No hit	No description
Pfam	PF00170	1.2E-10	227	278	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-9	227	277	No hit	No description
Pfam	PF12498	1.8E-51	294	411	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MERVFSVEEI SDPFWVPPPP PQPPQSAAAA AAQQQGGGGA SGGGGGGNAM NRCPSEWYFQ 60 KFLEEAVLDS PVPNPSPRAE AGGIRGAGGV VPVDVKQPQL SAAAATSAVV DPVEYNAMLK 120 QKLEKDLAAV AMWRASGTVP PERPGAGSSL LNADVSHIGA PNSIGGNATP VQNMLSGPSG 180 GSGSQLVQNV DVLVKQPTSS SSREQSDDDD MEGEAETTGT ARPADQRLQR RKQSNRESAR 240 RSRSRKAAHL NELEAQVSQL RVENSSLLRR LADVNQKYND AAVDNRVLKA DVETLRAKVK 300 MAEDSVKRVT GMNALFPAAS DMSSLSMPFN SSPSEATSDA AVPIQDDPNN YFATNNDVGG 360 DNSYMPDIPS SVQEDEDFVN GALAAGKIGR TASLQRVASL EHLQKRMCGG PASSGSTS

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MERVFSVEEI SDPFWVPPPP PQPPQSAAAA AAQQQGGGGA SGGGGGGNAM NRCPSEWYFQ  60
KFLEEAVLDS PVPNPSPRAE AGGIRGAGGV VPVDVKQPQL SAAAATSAVV DPVEYNAMLK  120
QKLEKDLAAV AMWRASGTVP PERPGAGSSL LNADVSHIGA PNSIGGNATP VQNMLSGPSG  180
GSGSQLVQNV DVLVKQPTSS SSREQSDDDD MEGEAETTGT ARPADQRLQR RKQSNRESAR  240
RSRSRKAAHL NELEAQVSQL RVENSSLLRR LADVNQKYND AAVDNRVLKA DVETLRAKVK  300
MAEDSVKRVT GMNALFPAAS DMSSLSMPFN SSPSEATSDA AVPIQDDPNN YFATNNDVGG  360
DNSYMPDIPS SVQEDEDFVN GALAAGKIGR TASLQRVASL EHLQKRMCGG PASSGSTS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT829375	0.0	CT829375.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631619.1	0.0	bZIP transcription factor RISBZ2-like
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A0E0D868	0.0	A0A0E0D868_9ORYZ; Uncharacterized protein
STRING	OMERI03G33960.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-35	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]