PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G33790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 344aa MW: 34827.4 Da PI: 7.8493 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.4 | 8.6e-37 | 49 | 163 | 1 | 105 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec....eaesss 79 a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++ + + +s+ OMERI03G33790.1 49 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaA------AdaapTRRRSQ 136 5899*************************************************************888886554321......12223233333 PP TCP 80 ssasnsssgkaaksaa.kskksqksaa 105 +++++ s+++ ++s+ +sk s+k+ + OMERI03G33790.1 137 QQQQQLSNKSGCSSTSeTSKGSDKEVT 163 333333333333333323333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.5E-35 | 51 | 159 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.607 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MEAAVGDGEG GGSGGGRGKR GRGGGGGGEM VEAVWGQTGT ASRIYRVRAT GGKDRHSKVY 60 TAKGIRDRRV RLSVATAIQF YDLQDRLGFD QPSKAIEWLI NAASPAIDTL PSLDPAAFAA 120 IPHAAADAAP TRRRSQQQQQ QLSNKSGCSS TSETSKGSDK EVTVASAPAQ AASFTELLIA 180 GVAASAAAGG GAIGNGADCV GIAHPGKGGA EGASTYGFSA ASSFGDAPPI GMVPAPPFNF 240 SAPGADMATH YSLPQDQLAA PPPPAGGDYN LNFSMSSGFL GANRGTLQSN SPSHLSGHHH 300 HHHQQQLQRL DGSTISFLLG HAAATAHPAA SEGQITSTAA LQLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-26 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-26 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133340 | 0.0 | AC133340.4 Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence. | |||
GenBank | AK242788 | 0.0 | AK242788.1 Oryza sativa Japonica Group cDNA, clone: J090057A17, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629084.1 | 1e-179 | transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 1e-180 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | A0A0E0D7V8 | 0.0 | A0A0E0D7V8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G33150.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-34 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |