PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G33580.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 387aa MW: 41218.5 Da PI: 7.2605

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G33580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.1	7.4e-14	342	382	4	49
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+e OMERI03G33580.1 342 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIE 382 6***********************8.....6**********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.47E-12	333	382	No hit	No description
SuperFamily	SSF47459	2.49E-14	336	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.751	338	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-11	342	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	342	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-8	344	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MPNPSSLLAS PSPPHRNSSS SSSISIISTP ATIQPDAAHG PCSLLTTSKY ALRDTRGSKS 60 SYTRLFCCCC CTAAPKAEQE EETLQQELLL FGLVQVVNFL GGHKNRGMDG NARSAANQTK 120 QIVTDNELVE LLWHNGGVVA QPQAAQARVV SSSGRGQSAS VLTGDDTETA AWFPDTLDDA 180 LEKDLYTQLW RSVTGDAFPA AAAAGPSSHH APPPDLPPPA ARPPMRSGIG SSWTGDICSA 240 FCGSNHIPET AAQRCRDAGA ALPPERPRRS STHDGAGTSS SGGSGSNFGA SGLPSESASA 300 HKRKGREDSD SRSEDAECEA TEETKSSSRR YGSKRRTRAA EVHNLSERRR RDRINEKMRA 360 LQELIPHCNK TDKASILDEA IEIRNST

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MPNPSSLLAS PSPPHRNSSS SSSISIISTP ATIQPDAAHG PCSLLTTSKY ALRDTRGSKS  60
SYTRLFCCCC CTAAPKAEQE EETLQQELLL FGLVQVVNFL GGHKNRGMDG NARSAANQTK  120
QIVTDNELVE LLWHNGGVVA QPQAAQARVV SSSGRGQSAS VLTGDDTETA AWFPDTLDDA  180
LEKDLYTQLW RSVTGDAFPA AAAAGPSSHH APPPDLPPPA ARPPMRSGIG SSWTGDICSA  240
FCGSNHIPET AAQRCRDAGA ALPPERPRRS STHDGAGTSS SGGSGSNFGA SGLPSESASA  300
HKRKGREDSD SRSEDAECEA TEETKSSSRR YGSKRRTRAA EVHNLSERRR RDRINEKMRA  360
LQELIPHCNK TDKASILDEA IEIRNST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	350	KRRTRAAEVHNLSERRRR
2	346	351	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT829014	0.0	CT829014.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI232P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633322.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
Swissprot	Q10CH5	0.0	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A0E0D7R0	0.0	A0A0E0D7R0_9ORYZ; Uncharacterized protein
STRING	ORUFI03G37840.5	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	5e-21	phytochrome interacting factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]