PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G32960.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 854aa    MW: 93331.1 Da    PI: 8.1399
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G32960.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-07153195347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E++ + +a ++ G++ +++I  +++  +   q++++++ +
  OMERI03G32960.3 153 AWTRQEEQSFFNALRLEGKN-FEKITLHVQ-SKNKDQVRHYYYRL 195
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_01364_A15.763257IPR023676Ribosomal protein S14, type Z, archaeal
PfamPF002532.2E-15754IPR001209Ribosomal protein S14
PROSITE profilePS5129312.236149200IPR017884SANT domain
SMARTSM007174.5E-5150198IPR001005SANT/Myb domain
SuperFamilySSF466898.58E-9153200IPR009057Homeodomain-like
PfamPF002491.5E-5153195IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-4153202IPR009057Homeodomain-like
CDDcd001673.05E-5153196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005634Cellular Componentnucleus
GO:0015935Cellular Componentsmall ribosomal subunit
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MGHSNVWNSH PKNYGPGSRV CRVCGNPHGL IRKYGLMCCR QCFRSNAKDI GFIKVGSLEL  60
GSFTALGPKF PSAAHRLSLH LTSSGGEHAL ASSPSHSRPP RAGLDPEATP PASIASRFES  120
NRIEGSRKIG GSAELYAPSE VCLCREADRQ WAAWTRQEEQ SFFNALRLEG KNFEKITLHV  180
QSKNKDQVRH YYYRLVRRMK KLLGPEFSLD AKNSKDIVAA MLCWWSLLEK FSCSASKLHL  240
KPRRFKTFVE ALGNQLLKDR NKTRKKCPRG DVCLSSSSPI LNRTPGNESS SVKLLPVDVS  300
NGSKVASSKG AVFKRGAEPN SNNKSGSTKG DLSATITVKQ KKRAGGGVAS AAYRKWERDA  360
MAGVSLVADA AEELERNTVN VDARMLSPSP SNVCTVDGPG TNHMNEADKQ APAKLKLQLF  420
PINEATQKAL EKDEHNPHLE LTVSARKKIS SVLEHLNRKW GSSNIASGEL LLFPYCANQE  480
DLATYQRWTT RDTVVVADVF LSVNSPPVFR LRYGWFSLAE LEGGSGISST HFKNCMIPED  540
IHAKSPSEAC VQKDGTFLSS CAPDEHLCNS KDRSALFLAM TFSTGKSAKG QELHSDFPTS  600
WFSRQKQEKV STNQANLGMD CAIISEGEWA DTLTDISVGY LLTEASVGTN TDCPGTAIAK  660
NTLFLENPCS YDSFDAAVAL HASRHKTVEQ PALASHSTIW GAEETCDEFS FNLAASRKQE  720
SSNTSASSSP DSDSGVLPST SQGFQGFLQD LAGAKVADNP CMDDGKHMEA LCANSPPRSK  780
SDSGLKHQSL ADLYWADSLG PLDLELPSVR YQAEDLLLGD SQNSWNRMMV NSLDAFRNLS  840
FFMADKNDSI PSIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Bd2e-3215415440S ribosomal protein S14
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632482.10.0TSL-kinase interacting protein 1 isoform X1
TrEMBLA0A0E0D7I30.0A0A0E0D7I3_9ORYZ; Uncharacterized protein
STRINGORUFI03G37210.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-155TSL-kinase interacting protein 1